Hb_000196_090

Information

Type -
Description -
Location Contig196: 143833-145426
Sequence    

Annotation

kegg
ID rcu:RCOM_1333990
description axonemal dynein light chain, putative
nr
ID XP_002521826.1
description axonemal dynein light chain, putative [Ricinus communis]
swissprot
ID O02414
description Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina PE=3 SV=1
trembl
ID B9S757
description Axonemal dynein light chain, putative OS=Ricinus communis GN=RCOM_1333990 PE=4 SV=1
Gene Ontology
ID GO:0005875
description axonemal dynein light

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19665: 143975-145210
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000196_090 0.0 - - axonemal dynein light chain, putative [Ricinus communis]
2 Hb_002794_030 0.0955944639 - - hypothetical protein JCGZ_20185 [Jatropha curcas]
3 Hb_002540_030 0.0967892285 - - hypothetical protein 32 [Hevea brasiliensis]
4 Hb_002609_280 0.0969331067 - - villin 1-4, putative [Ricinus communis]
5 Hb_007672_010 0.1054920848 - - PREDICTED: uncharacterized protein LOC105639669 isoform X1 [Jatropha curcas]
6 Hb_000261_460 0.1077187596 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
7 Hb_001329_210 0.1117927894 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
8 Hb_000030_100 0.1127140817 - - PREDICTED: short-chain type dehydrogenase/reductase isoform X2 [Jatropha curcas]
9 Hb_005618_040 0.1132487171 - - -
10 Hb_100506_010 0.1138841334 - - PREDICTED: uncharacterized protein LOC105133651 isoform X2 [Populus euphratica]
11 Hb_000086_570 0.1154353846 - - hypothetical protein JCGZ_24934 [Jatropha curcas]
12 Hb_000671_150 0.1160196355 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
13 Hb_008289_060 0.11884604 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
14 Hb_000179_050 0.1194038249 - - 40S ribosomal protein S17A [Hevea brasiliensis]
15 Hb_014720_080 0.1196902779 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
16 Hb_007101_130 0.1208475081 - - conserved hypothetical protein [Ricinus communis]
17 Hb_006153_120 0.1220680319 - - hypothetical protein JCGZ_20793 [Jatropha curcas]
18 Hb_005694_080 0.1229290392 - - DNA-directed RNA polymerase III, putative [Ricinus communis]
19 Hb_010172_070 0.1235546269 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
20 Hb_155764_020 0.1235938869 - - hypothetical protein B456_009G265500 [Gossypium raimondii]

Gene co-expression network

sample Hb_000196_090 Hb_000196_090 Hb_002794_030 Hb_002794_030 Hb_000196_090--Hb_002794_030 Hb_002540_030 Hb_002540_030 Hb_000196_090--Hb_002540_030 Hb_002609_280 Hb_002609_280 Hb_000196_090--Hb_002609_280 Hb_007672_010 Hb_007672_010 Hb_000196_090--Hb_007672_010 Hb_000261_460 Hb_000261_460 Hb_000196_090--Hb_000261_460 Hb_001329_210 Hb_001329_210 Hb_000196_090--Hb_001329_210 Hb_007229_060 Hb_007229_060 Hb_002794_030--Hb_007229_060 Hb_000156_100 Hb_000156_100 Hb_002794_030--Hb_000156_100 Hb_000671_150 Hb_000671_150 Hb_002794_030--Hb_000671_150 Hb_000983_100 Hb_000983_100 Hb_002794_030--Hb_000983_100 Hb_002527_070 Hb_002527_070 Hb_002794_030--Hb_002527_070 Hb_014720_080 Hb_014720_080 Hb_002540_030--Hb_014720_080 Hb_010172_070 Hb_010172_070 Hb_002540_030--Hb_010172_070 Hb_000922_270 Hb_000922_270 Hb_002540_030--Hb_000922_270 Hb_007666_020 Hb_007666_020 Hb_002540_030--Hb_007666_020 Hb_003893_090 Hb_003893_090 Hb_002540_030--Hb_003893_090 Hb_001538_100 Hb_001538_100 Hb_002540_030--Hb_001538_100 Hb_000264_090 Hb_000264_090 Hb_002609_280--Hb_000264_090 Hb_007101_130 Hb_007101_130 Hb_002609_280--Hb_007101_130 Hb_002609_280--Hb_007672_010 Hb_000030_100 Hb_000030_100 Hb_002609_280--Hb_000030_100 Hb_002182_060 Hb_002182_060 Hb_002609_280--Hb_002182_060 Hb_007672_010--Hb_007101_130 Hb_000376_050 Hb_000376_050 Hb_007672_010--Hb_000376_050 Hb_021650_030 Hb_021650_030 Hb_007672_010--Hb_021650_030 Hb_000056_340 Hb_000056_340 Hb_007672_010--Hb_000056_340 Hb_002890_280 Hb_002890_280 Hb_007672_010--Hb_002890_280 Hb_002078_450 Hb_002078_450 Hb_007672_010--Hb_002078_450 Hb_005618_040 Hb_005618_040 Hb_000261_460--Hb_005618_040 Hb_000089_160 Hb_000089_160 Hb_000261_460--Hb_000089_160 Hb_000051_040 Hb_000051_040 Hb_000261_460--Hb_000051_040 Hb_003680_070 Hb_003680_070 Hb_000261_460--Hb_003680_070 Hb_007021_020 Hb_007021_020 Hb_000261_460--Hb_007021_020 Hb_100506_010 Hb_100506_010 Hb_000261_460--Hb_100506_010 Hb_001278_050 Hb_001278_050 Hb_001329_210--Hb_001278_050 Hb_001935_030 Hb_001935_030 Hb_001329_210--Hb_001935_030 Hb_002078_460 Hb_002078_460 Hb_001329_210--Hb_002078_460 Hb_007382_150 Hb_007382_150 Hb_001329_210--Hb_007382_150 Hb_001329_210--Hb_002540_030 Hb_001329_210--Hb_007666_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.0261 6.50381 1.21118 3.00309 8.38425 11.7318
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.6836 30.8447 24.3664 11.629 1.24741

CAGE analysis