Hb_000197_020

Information

Type -
Description -
Location Contig197: 3945-8417
Sequence    

Annotation

kegg
ID tcc:TCM_006859
description Endoplasmatic reticulum retrieval protein 1B isoform 1
nr
ID XP_012067251.1
description PREDICTED: protein RER1A [Jatropha curcas]
swissprot
ID O48671
description Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=1 SV=2
trembl
ID A0A067LCH8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26792 PE=4 SV=1
Gene Ontology
ID GO:0016021
description protein rer1a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19753: 3957-7977 , PASA_asmbl_19754: 4898-5341 , PASA_asmbl_19755: 3949-8013 , PASA_asmbl_19756: 6962-7986 , PASA_asmbl_19758: 5466-5862 , PASA_asmbl_19759: 4542-4881
cDNA
(Sanger)
(ID:Location)		 006_A08.ab1: 4391-7954 , 045_N11.ab1: 4108-7964 , 048_D01.ab1: 4419-7964

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000197_020 0.0 - - PREDICTED: protein RER1A [Jatropha curcas]
2 Hb_000066_030 0.0656518883 - - PREDICTED: uncharacterized protein LOC105643898 isoform X2 [Jatropha curcas]
3 Hb_003998_040 0.0739731167 - - organic anion transporter, putative [Ricinus communis]
4 Hb_004055_120 0.074668193 - - PREDICTED: uncharacterized protein LOC105631443 [Jatropha curcas]
5 Hb_000705_230 0.0791921958 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Jatropha curcas]
6 Hb_010407_140 0.0798534603 - - PREDICTED: malate dehydrogenase [Jatropha curcas]
7 Hb_011214_160 0.079861614 - - PREDICTED: coatomer subunit delta [Jatropha curcas]
8 Hb_013394_050 0.0854445615 - - PREDICTED: somatic embryogenesis receptor kinase 2 [Nicotiana sylvestris]
9 Hb_010672_020 0.0859647596 - - PREDICTED: ATP synthase gamma chain, chloroplastic-like [Jatropha curcas]
10 Hb_005701_120 0.0867339408 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Cucumis sativus]
11 Hb_007894_010 0.089223174 - - PREDICTED: uncharacterized protein LOC105632963 [Jatropha curcas]
12 Hb_001633_200 0.089252978 - - hypothetical protein B456_005G137400 [Gossypium raimondii]
13 Hb_000072_300 0.0909996043 - - PREDICTED: probable galacturonosyltransferase 9 [Jatropha curcas]
14 Hb_000069_640 0.091903033 - - PREDICTED: tubulin gamma-1 chain [Vitis vinifera]
15 Hb_005218_020 0.0938094383 - - Uncharacterized protein isoform 3 [Theobroma cacao]
16 Hb_004088_040 0.0944974375 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform [Jatropha curcas]
17 Hb_001507_120 0.0947015699 - - transcription factor, putative [Ricinus communis]
18 Hb_000395_110 0.0954322153 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
19 Hb_011310_110 0.0964388507 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g25400 isoform X1 [Jatropha curcas]
20 Hb_001454_230 0.0973263401 - - PREDICTED: kinesin-13A isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000197_020 Hb_000197_020 Hb_000066_030 Hb_000066_030 Hb_000197_020--Hb_000066_030 Hb_003998_040 Hb_003998_040 Hb_000197_020--Hb_003998_040 Hb_004055_120 Hb_004055_120 Hb_000197_020--Hb_004055_120 Hb_000705_230 Hb_000705_230 Hb_000197_020--Hb_000705_230 Hb_010407_140 Hb_010407_140 Hb_000197_020--Hb_010407_140 Hb_011214_160 Hb_011214_160 Hb_000197_020--Hb_011214_160 Hb_000066_030--Hb_003998_040 Hb_005218_020 Hb_005218_020 Hb_000066_030--Hb_005218_020 Hb_007765_040 Hb_007765_040 Hb_000066_030--Hb_007765_040 Hb_000371_090 Hb_000371_090 Hb_000066_030--Hb_000371_090 Hb_000066_030--Hb_011214_160 Hb_003998_040--Hb_005218_020 Hb_003998_040--Hb_011214_160 Hb_003998_040--Hb_007765_040 Hb_001633_080 Hb_001633_080 Hb_003998_040--Hb_001633_080 Hb_003998_040--Hb_000371_090 Hb_000256_150 Hb_000256_150 Hb_004055_120--Hb_000256_150 Hb_000787_160 Hb_000787_160 Hb_004055_120--Hb_000787_160 Hb_000917_130 Hb_000917_130 Hb_004055_120--Hb_000917_130 Hb_004055_120--Hb_003998_040 Hb_000300_270 Hb_000300_270 Hb_004055_120--Hb_000300_270 Hb_010672_020 Hb_010672_020 Hb_000705_230--Hb_010672_020 Hb_011310_110 Hb_011310_110 Hb_000705_230--Hb_011310_110 Hb_001633_200 Hb_001633_200 Hb_000705_230--Hb_001633_200 Hb_000703_190 Hb_000703_190 Hb_000705_230--Hb_000703_190 Hb_000069_640 Hb_000069_640 Hb_000705_230--Hb_000069_640 Hb_007894_010 Hb_007894_010 Hb_010407_140--Hb_007894_010 Hb_010407_140--Hb_001633_080 Hb_006570_160 Hb_006570_160 Hb_010407_140--Hb_006570_160 Hb_000127_140 Hb_000127_140 Hb_010407_140--Hb_000127_140 Hb_011282_060 Hb_011282_060 Hb_010407_140--Hb_011282_060 Hb_001703_050 Hb_001703_050 Hb_011214_160--Hb_001703_050 Hb_011214_160--Hb_000371_090 Hb_001051_070 Hb_001051_070 Hb_011214_160--Hb_001051_070 Hb_000139_530 Hb_000139_530 Hb_011214_160--Hb_000139_530
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.7539 23.4667 60.0293 99.7837 20.949 30.3822
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.083 25.4474 41.9051 36.5179 44.403

CAGE analysis