Hb_000197_030

Information

Type -
Description -
Location Contig197: 17125-22849
Sequence    

Annotation

kegg
ID rcu:RCOM_1447500
description hypothetical protein
nr
ID XP_002512923.1
description hypothetical protein RCOM_1447500 [Ricinus communis]
swissprot
ID Q84V03
description F-box protein At2g16365 OS=Arabidopsis thaliana GN=At2g16365 PE=2 SV=2
trembl
ID B9RH64
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1447500 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19760: 17446-22768
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000197_030 0.0 - - hypothetical protein RCOM_1447500 [Ricinus communis]
2 Hb_000418_010 0.063386548 - - PREDICTED: repressor of RNA polymerase III transcription MAF1 homolog [Jatropha curcas]
3 Hb_000059_020 0.0770321923 - - PREDICTED: F-box protein SKP2A [Jatropha curcas]
4 Hb_001489_100 0.0813117514 - - PREDICTED: hypersensitive-induced response protein 2 [Jatropha curcas]
5 Hb_026198_060 0.0850533692 - - PREDICTED: calcium-dependent protein kinase 11 [Jatropha curcas]
6 Hb_002119_090 0.0866955339 - - PREDICTED: protein OBERON 3 [Jatropha curcas]
7 Hb_006198_020 0.0877479758 - - PREDICTED: uncharacterized protein LOC105644416 [Jatropha curcas]
8 Hb_000700_060 0.0880189821 - - PREDICTED: uncharacterized protein LOC105644416 [Jatropha curcas]
9 Hb_006738_050 0.0891626261 - - PREDICTED: uncharacterized protein LOC105634992 [Jatropha curcas]
10 Hb_000069_480 0.0897083494 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000649_250 0.0901059914 transcription factor TF Family: C2H2 PREDICTED: UBX domain-containing protein 6 [Jatropha curcas]
12 Hb_002045_250 0.0908184248 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP63 isoform X3 [Jatropha curcas]
13 Hb_001257_100 0.0911080851 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
14 Hb_002903_140 0.0912090968 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
15 Hb_000635_200 0.0920441183 rubber biosynthesis Gene Name: SRPP5 PREDICTED: REF/SRPP-like protein At1g67360 [Jatropha curcas]
16 Hb_004785_030 0.0924691038 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
17 Hb_002284_170 0.0934639315 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1b [Jatropha curcas]
18 Hb_000069_130 0.0945194485 - - PREDICTED: uncharacterized protein LOC105642829 isoform X1 [Jatropha curcas]
19 Hb_000580_030 0.0959168233 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
20 Hb_005288_140 0.0970331032 - - PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta-like [Jatropha curcas]

Gene co-expression network

sample Hb_000197_030 Hb_000197_030 Hb_000418_010 Hb_000418_010 Hb_000197_030--Hb_000418_010 Hb_000059_020 Hb_000059_020 Hb_000197_030--Hb_000059_020 Hb_001489_100 Hb_001489_100 Hb_000197_030--Hb_001489_100 Hb_026198_060 Hb_026198_060 Hb_000197_030--Hb_026198_060 Hb_002119_090 Hb_002119_090 Hb_000197_030--Hb_002119_090 Hb_006198_020 Hb_006198_020 Hb_000197_030--Hb_006198_020 Hb_000069_480 Hb_000069_480 Hb_000418_010--Hb_000069_480 Hb_000671_080 Hb_000671_080 Hb_000418_010--Hb_000671_080 Hb_001257_100 Hb_001257_100 Hb_000418_010--Hb_001257_100 Hb_000418_010--Hb_001489_100 Hb_000418_010--Hb_006198_020 Hb_000862_040 Hb_000862_040 Hb_000059_020--Hb_000862_040 Hb_000940_200 Hb_000940_200 Hb_000059_020--Hb_000940_200 Hb_005568_040 Hb_005568_040 Hb_000059_020--Hb_005568_040 Hb_000700_060 Hb_000700_060 Hb_000059_020--Hb_000700_060 Hb_000009_330 Hb_000009_330 Hb_000059_020--Hb_000009_330 Hb_000580_030 Hb_000580_030 Hb_001489_100--Hb_000580_030 Hb_002284_170 Hb_002284_170 Hb_001489_100--Hb_002284_170 Hb_008937_010 Hb_008937_010 Hb_001489_100--Hb_008937_010 Hb_001033_050 Hb_001033_050 Hb_001489_100--Hb_001033_050 Hb_008253_020 Hb_008253_020 Hb_001489_100--Hb_008253_020 Hb_001135_120 Hb_001135_120 Hb_001489_100--Hb_001135_120 Hb_005288_140 Hb_005288_140 Hb_026198_060--Hb_005288_140 Hb_000649_250 Hb_000649_250 Hb_026198_060--Hb_000649_250 Hb_022425_060 Hb_022425_060 Hb_026198_060--Hb_022425_060 Hb_026198_060--Hb_001257_100 Hb_004517_020 Hb_004517_020 Hb_026198_060--Hb_004517_020 Hb_001259_120 Hb_001259_120 Hb_026198_060--Hb_001259_120 Hb_004785_030 Hb_004785_030 Hb_002119_090--Hb_004785_030 Hb_002119_090--Hb_000700_060 Hb_000069_130 Hb_000069_130 Hb_002119_090--Hb_000069_130 Hb_006738_050 Hb_006738_050 Hb_002119_090--Hb_006738_050 Hb_002119_090--Hb_001257_100 Hb_002119_090--Hb_002284_170 Hb_005015_080 Hb_005015_080 Hb_006198_020--Hb_005015_080 Hb_006198_020--Hb_000059_020 Hb_006198_020--Hb_000069_130 Hb_006198_020--Hb_000940_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.926 42.4109 19.2467 28.6182 12.2795 19.2277
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.42976 6.7992 8.3022 17.5738 13.2662

CAGE analysis