Hb_000197_040

Information

Type -
Description -
Location Contig197: 23662-25847
Sequence    

Annotation

kegg
ID rcu:RCOM_1447510
description AMP-activated protein kinase, gamma regulatory subunit, putative
nr
ID XP_002512924.1
description AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis]
swissprot
ID Q8LBB2
description SNF1-related protein kinase regulatory subunit gamma-1 OS=Arabidopsis thaliana GN=KING1 PE=1 SV=2
trembl
ID B9RH65
description AMP-activated protein kinase, gamma regulatory subunit, putative OS=Ricinus communis GN=RCOM_1447510 PE=4 SV=1
Gene Ontology
ID GO:0016301
description snf1-related protein kinase regulatory subunit gamma-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19763: 24866-25313 , PASA_asmbl_19764: 25496-25608 , PASA_asmbl_19765: 26368-26946
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000197_040 0.0 - - AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis]
2 Hb_002408_010 0.1080469189 - - cation-transporting atpase plant, putative [Ricinus communis]
3 Hb_002942_020 0.1217314761 - - nucleotide binding protein, putative [Ricinus communis]
4 Hb_033642_020 0.1223155286 - - hypothetical protein JCGZ_19094 [Jatropha curcas]
5 Hb_003106_130 0.1239466584 - - PREDICTED: uncharacterized protein LOC105640436 [Jatropha curcas]
6 Hb_000025_760 0.1258167096 - - -
7 Hb_002235_150 0.1269820948 - - -
8 Hb_004607_120 0.1320245777 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8 [Jatropha curcas]
9 Hb_028900_020 0.1320742828 - - unnamed protein product [Coffea canephora]
10 Hb_027892_060 0.1327470547 - - PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3 isoform X1 [Jatropha curcas]
11 Hb_000997_060 0.134402851 - - PREDICTED: DNA repair protein XRCC4 [Jatropha curcas]
12 Hb_008406_160 0.1375439927 - - PREDICTED: ADP,ATP carrier protein 3, mitochondrial [Jatropha curcas]
13 Hb_007101_100 0.1388400804 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
14 Hb_000270_360 0.1402524126 - - PREDICTED: serine/threonine-protein kinase pakF-like [Jatropha curcas]
15 Hb_003453_010 0.1403197496 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000258_410 0.1404723345 - - PREDICTED: uncharacterized protein LOC105630409 [Jatropha curcas]
17 Hb_000840_270 0.1408497986 - - PREDICTED: small RNA degrading nuclease 1 [Jatropha curcas]
18 Hb_060809_010 0.1416991613 - - PREDICTED: uncharacterized protein LOC105163892 [Sesamum indicum]
19 Hb_003120_060 0.1438181592 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
20 Hb_000176_110 0.1441658206 - - PREDICTED: serine--tRNA ligase [Jatropha curcas]

Gene co-expression network

sample Hb_000197_040 Hb_000197_040 Hb_002408_010 Hb_002408_010 Hb_000197_040--Hb_002408_010 Hb_002942_020 Hb_002942_020 Hb_000197_040--Hb_002942_020 Hb_033642_020 Hb_033642_020 Hb_000197_040--Hb_033642_020 Hb_003106_130 Hb_003106_130 Hb_000197_040--Hb_003106_130 Hb_000025_760 Hb_000025_760 Hb_000197_040--Hb_000025_760 Hb_002235_150 Hb_002235_150 Hb_000197_040--Hb_002235_150 Hb_000019_230 Hb_000019_230 Hb_002408_010--Hb_000019_230 Hb_003120_060 Hb_003120_060 Hb_002408_010--Hb_003120_060 Hb_000608_030 Hb_000608_030 Hb_002408_010--Hb_000608_030 Hb_005928_060 Hb_005928_060 Hb_002408_010--Hb_005928_060 Hb_000384_090 Hb_000384_090 Hb_002408_010--Hb_000384_090 Hb_000009_550 Hb_000009_550 Hb_002408_010--Hb_000009_550 Hb_027892_060 Hb_027892_060 Hb_002942_020--Hb_027892_060 Hb_003125_040 Hb_003125_040 Hb_002942_020--Hb_003125_040 Hb_118419_020 Hb_118419_020 Hb_002942_020--Hb_118419_020 Hb_003540_040 Hb_003540_040 Hb_002942_020--Hb_003540_040 Hb_168918_020 Hb_168918_020 Hb_002942_020--Hb_168918_020 Hb_000905_190 Hb_000905_190 Hb_002942_020--Hb_000905_190 Hb_028900_020 Hb_028900_020 Hb_033642_020--Hb_028900_020 Hb_000077_050 Hb_000077_050 Hb_033642_020--Hb_000077_050 Hb_000176_110 Hb_000176_110 Hb_033642_020--Hb_000176_110 Hb_033642_020--Hb_003106_130 Hb_033642_020--Hb_000025_760 Hb_024714_030 Hb_024714_030 Hb_033642_020--Hb_024714_030 Hb_003106_130--Hb_003120_060 Hb_119583_010 Hb_119583_010 Hb_003106_130--Hb_119583_010 Hb_001246_100 Hb_001246_100 Hb_003106_130--Hb_001246_100 Hb_003106_130--Hb_002942_020 Hb_003106_130--Hb_000019_230 Hb_003106_130--Hb_002235_150 Hb_000025_760--Hb_003106_130 Hb_002955_010 Hb_002955_010 Hb_000025_760--Hb_002955_010 Hb_001758_020 Hb_001758_020 Hb_000025_760--Hb_001758_020 Hb_010298_010 Hb_010298_010 Hb_000025_760--Hb_010298_010 Hb_003911_040 Hb_003911_040 Hb_000025_760--Hb_003911_040 Hb_003746_040 Hb_003746_040 Hb_002235_150--Hb_003746_040 Hb_002235_150--Hb_002408_010 Hb_002235_150--Hb_003120_060 Hb_000622_100 Hb_000622_100 Hb_002235_150--Hb_000622_100 Hb_043302_010 Hb_043302_010 Hb_002235_150--Hb_043302_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.893055 0.328542 0.170031 0.364247 1.81858 1.9654
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.60625 1.0267 0.444089 0.136723 0.439456

CAGE analysis