Hb_000197_050

Information

Type -
Description -
Location Contig197: 26320-32878
Sequence    

Annotation

kegg
ID rcu:RCOM_1447520
description glucose-1-phosphate adenylyltransferase, putative (EC:2.7.7.27)
nr
ID AHM92232.1
description AGPase large subunit protein [Hevea brasiliensis]
swissprot
ID P55231
description Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic OS=Arabidopsis thaliana GN=APL3 PE=2 SV=2
trembl
ID X2F9N2
description Glucose-1-phosphate adenylyltransferase OS=Hevea brasiliensis GN=LSUI PE=2 SV=1
Gene Ontology
ID GO:0009507
description glucose-1-phosphate adenylyltransferase large subunit 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19765: 26368-26946 , PASA_asmbl_19766: 32056-32276
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000197_050 0.0 - - AGPase large subunit protein [Hevea brasiliensis]
2 Hb_004525_070 0.1386967416 - - abhydrolase domain containing, putative [Ricinus communis]
3 Hb_001662_040 0.166746539 - - DNA helicase, putative [Ricinus communis]
4 Hb_007982_050 0.1672962378 - - PREDICTED: somatic embryogenesis receptor kinase 2-like [Jatropha curcas]
5 Hb_000134_250 0.168473962 - - protein with unknown function [Ricinus communis]
6 Hb_003780_090 0.1691080635 - - PREDICTED: transcription factor bHLH128 [Jatropha curcas]
7 Hb_001373_160 0.1789476658 - - hypothetical protein JCGZ_16907 [Jatropha curcas]
8 Hb_033554_020 0.1859849007 transcription factor TF Family: BES1 PREDICTED: beta-amylase 8 [Jatropha curcas]
9 Hb_002157_050 0.1873538437 - - hypothetical protein JCGZ_16907 [Jatropha curcas]
10 Hb_000296_010 0.1881346132 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
11 Hb_163591_010 0.1891902216 - - PREDICTED: amidase 1-like isoform X2 [Populus euphratica]
12 Hb_002890_100 0.1906757067 - - PREDICTED: mitotic spindle checkpoint protein MAD1 isoform X1 [Jatropha curcas]
13 Hb_006501_010 0.1930675606 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A isoform X1 [Populus euphratica]
14 Hb_004096_070 0.1989505828 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Jatropha curcas]
15 Hb_025194_020 0.199037957 - - PREDICTED: uncharacterized protein C1F8.04c-like isoform X1 [Jatropha curcas]
16 Hb_011344_090 0.1991055889 - - PREDICTED: FAM10 family protein At4g22670 [Jatropha curcas]
17 Hb_000011_360 0.2000119509 - - PREDICTED: translation initiation factor eIF-2B subunit alpha-like [Fragaria vesca subsp. vesca]
18 Hb_000237_190 0.2000423641 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3 isoform X1 [Jatropha curcas]
19 Hb_003025_050 0.2006433435 - - PREDICTED: citrate synthase, glyoxysomal [Jatropha curcas]
20 Hb_005333_160 0.2012088227 - - hypothetical protein B456_009G230200 [Gossypium raimondii]

Gene co-expression network

sample Hb_000197_050 Hb_000197_050 Hb_004525_070 Hb_004525_070 Hb_000197_050--Hb_004525_070 Hb_001662_040 Hb_001662_040 Hb_000197_050--Hb_001662_040 Hb_007982_050 Hb_007982_050 Hb_000197_050--Hb_007982_050 Hb_000134_250 Hb_000134_250 Hb_000197_050--Hb_000134_250 Hb_003780_090 Hb_003780_090 Hb_000197_050--Hb_003780_090 Hb_001373_160 Hb_001373_160 Hb_000197_050--Hb_001373_160 Hb_004525_070--Hb_001662_040 Hb_009265_050 Hb_009265_050 Hb_004525_070--Hb_009265_050 Hb_033554_020 Hb_033554_020 Hb_004525_070--Hb_033554_020 Hb_002291_060 Hb_002291_060 Hb_004525_070--Hb_002291_060 Hb_009659_030 Hb_009659_030 Hb_004525_070--Hb_009659_030 Hb_004525_070--Hb_001373_160 Hb_163591_010 Hb_163591_010 Hb_001662_040--Hb_163591_010 Hb_000002_120 Hb_000002_120 Hb_001662_040--Hb_000002_120 Hb_000023_320 Hb_000023_320 Hb_001662_040--Hb_000023_320 Hb_002067_030 Hb_002067_030 Hb_001662_040--Hb_002067_030 Hb_000371_010 Hb_000371_010 Hb_001662_040--Hb_000371_010 Hb_000098_140 Hb_000098_140 Hb_001662_040--Hb_000098_140 Hb_130389_010 Hb_130389_010 Hb_007982_050--Hb_130389_010 Hb_077048_010 Hb_077048_010 Hb_007982_050--Hb_077048_010 Hb_007982_050--Hb_001373_160 Hb_002890_100 Hb_002890_100 Hb_007982_050--Hb_002890_100 Hb_008160_030 Hb_008160_030 Hb_007982_050--Hb_008160_030 Hb_000184_150 Hb_000184_150 Hb_007982_050--Hb_000184_150 Hb_000994_020 Hb_000994_020 Hb_000134_250--Hb_000994_020 Hb_000134_250--Hb_001373_160 Hb_000260_770 Hb_000260_770 Hb_000134_250--Hb_000260_770 Hb_000134_250--Hb_009659_030 Hb_006501_010 Hb_006501_010 Hb_000134_250--Hb_006501_010 Hb_010287_030 Hb_010287_030 Hb_000134_250--Hb_010287_030 Hb_002157_050 Hb_002157_050 Hb_003780_090--Hb_002157_050 Hb_003780_090--Hb_002890_100 Hb_118840_050 Hb_118840_050 Hb_003780_090--Hb_118840_050 Hb_029695_020 Hb_029695_020 Hb_003780_090--Hb_029695_020 Hb_001047_200 Hb_001047_200 Hb_003780_090--Hb_001047_200 Hb_000010_360 Hb_000010_360 Hb_003780_090--Hb_000010_360 Hb_001373_160--Hb_033554_020 Hb_012940_040 Hb_012940_040 Hb_001373_160--Hb_012940_040 Hb_004724_370 Hb_004724_370 Hb_001373_160--Hb_004724_370 Hb_001171_030 Hb_001171_030 Hb_001373_160--Hb_001171_030 Hb_001373_160--Hb_010287_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.69137 5.19739 9.34167 2.07457 6.15303 3.65687
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.2702 1.34733 1.21005 9.55809 0.546024

CAGE analysis