Hb_000197_110

Information

Type -
Description -
Location Contig197: 123738-124421
Sequence    

Annotation

kegg
ID rcu:RCOM_1447810
description hypothetical protein
nr
ID XP_002512933.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RH74
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1447810 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000197_110 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003449_060 0.1985491286 - - PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]
3 Hb_001367_010 0.2036101628 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
4 Hb_009249_020 0.2043235337 - - PREDICTED: endoglucanase 25-like [Jatropha curcas]
5 Hb_000200_070 0.2047312051 - - PREDICTED: CDP-diacylglycerol--serine O-phosphatidyltransferase 1 isoform X1 [Jatropha curcas]
6 Hb_004374_130 0.2259358684 - - PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Jatropha curcas]
7 Hb_031403_030 0.2287469543 - - -
8 Hb_000979_010 0.2340479241 - - PREDICTED: uncharacterized protein LOC105128288 [Populus euphratica]
9 Hb_005618_060 0.2409660116 transcription factor TF Family: bHLH hypothetical protein RCOM_1343120 [Ricinus communis]
10 Hb_091761_010 0.2417676804 - - Rhomboid protein, putative [Ricinus communis]
11 Hb_001474_040 0.2425381546 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 [Jatropha curcas]
12 Hb_001454_080 0.2443786554 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
13 Hb_000844_030 0.2462357257 - - ent-kaurene oxidase, putative [Ricinus communis]
14 Hb_154114_030 0.2489299249 - - amino acid binding protein, putative [Ricinus communis]
15 Hb_002570_010 0.2527491321 - - hypothetical protein JCGZ_25329 [Jatropha curcas]
16 Hb_000869_060 0.2585334014 - - hypothetical protein L484_003245 [Morus notabilis]
17 Hb_000914_050 0.2589859658 - - PREDICTED: serine/threonine-protein kinase UCNL [Jatropha curcas]
18 Hb_007044_160 0.259207496 transcription factor TF Family: TCP PREDICTED: transcription factor CYCLOIDEA [Populus euphratica]
19 Hb_000665_220 0.2645851923 - - catalytic, putative [Ricinus communis]
20 Hb_002374_550 0.270024999 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]

Gene co-expression network

sample Hb_000197_110 Hb_000197_110 Hb_003449_060 Hb_003449_060 Hb_000197_110--Hb_003449_060 Hb_001367_010 Hb_001367_010 Hb_000197_110--Hb_001367_010 Hb_009249_020 Hb_009249_020 Hb_000197_110--Hb_009249_020 Hb_000200_070 Hb_000200_070 Hb_000197_110--Hb_000200_070 Hb_004374_130 Hb_004374_130 Hb_000197_110--Hb_004374_130 Hb_031403_030 Hb_031403_030 Hb_000197_110--Hb_031403_030 Hb_154114_030 Hb_154114_030 Hb_003449_060--Hb_154114_030 Hb_003449_060--Hb_000200_070 Hb_002475_120 Hb_002475_120 Hb_003449_060--Hb_002475_120 Hb_003449_060--Hb_004374_130 Hb_003449_060--Hb_001367_010 Hb_002570_010 Hb_002570_010 Hb_001367_010--Hb_002570_010 Hb_000979_010 Hb_000979_010 Hb_001367_010--Hb_000979_010 Hb_091761_010 Hb_091761_010 Hb_001367_010--Hb_091761_010 Hb_001367_010--Hb_000200_070 Hb_004545_180 Hb_004545_180 Hb_009249_020--Hb_004545_180 Hb_009838_020 Hb_009838_020 Hb_009249_020--Hb_009838_020 Hb_011021_010 Hb_011021_010 Hb_009249_020--Hb_011021_010 Hb_004899_340 Hb_004899_340 Hb_009249_020--Hb_004899_340 Hb_007044_160 Hb_007044_160 Hb_009249_020--Hb_007044_160 Hb_003688_010 Hb_003688_010 Hb_000200_070--Hb_003688_010 Hb_004052_180 Hb_004052_180 Hb_000200_070--Hb_004052_180 Hb_001623_080 Hb_001623_080 Hb_000200_070--Hb_001623_080 Hb_009189_020 Hb_009189_020 Hb_004374_130--Hb_009189_020 Hb_009393_200 Hb_009393_200 Hb_004374_130--Hb_009393_200 Hb_008054_050 Hb_008054_050 Hb_004374_130--Hb_008054_050 Hb_009222_070 Hb_009222_070 Hb_004374_130--Hb_009222_070 Hb_145317_010 Hb_145317_010 Hb_004374_130--Hb_145317_010 Hb_083628_010 Hb_083628_010 Hb_004374_130--Hb_083628_010 Hb_025905_010 Hb_025905_010 Hb_031403_030--Hb_025905_010 Hb_092062_010 Hb_092062_010 Hb_031403_030--Hb_092062_010 Hb_001758_130 Hb_001758_130 Hb_031403_030--Hb_001758_130 Hb_133605_010 Hb_133605_010 Hb_031403_030--Hb_133605_010 Hb_000914_050 Hb_000914_050 Hb_031403_030--Hb_000914_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.94451 4.54117 11.3696 24.2795 12.3466 9.62981
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0835632 0 0 0.374572 4.40441

CAGE analysis