Hb_000197_200

Information

Type -
Description -
Location Contig197: 234916-238953
Sequence    

Annotation

kegg
ID rcu:RCOM_1448100
description Sec14 cytosolic factor, putative
nr
ID XP_002512942.1
description Sec14 cytosolic factor, putative [Ricinus communis]
swissprot
ID Q93ZE9
description Phosphatidylinositol/phosphatidylcholine transfer protein SFH3 OS=Arabidopsis thaliana GN=SFH3 PE=2 SV=1
trembl
ID B9RH83
description Sec14 cytosolic factor, putative OS=Ricinus communis GN=RCOM_1448100 PE=4 SV=1
Gene Ontology
ID GO:0005622
description phosphatidylinositol phosphatidylcholine transfer protein sfh3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19772: 237489-238542 , PASA_asmbl_19773: 237489-238542
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000197_200 0.0 - - Sec14 cytosolic factor, putative [Ricinus communis]
2 Hb_002783_220 0.1304229654 - - PREDICTED: uncharacterized protein LOC105635342 isoform X1 [Jatropha curcas]
3 Hb_001950_070 0.1405843953 - - cyclin d, putative [Ricinus communis]
4 Hb_000526_010 0.1413927816 - - PREDICTED: uroporphyrinogen-III C-methyltransferase [Jatropha curcas]
5 Hb_002333_070 0.1463692611 - - PREDICTED: ACT domain-containing protein ACR4-like [Jatropha curcas]
6 Hb_000566_050 0.1471981463 - - PREDICTED: uncharacterized protein LOC105644845 [Jatropha curcas]
7 Hb_094121_010 0.1483365775 - - -
8 Hb_000622_130 0.1536359222 - - PREDICTED: tubulin gamma-1 chain [Vitis vinifera]
9 Hb_008725_060 0.1541356467 - - Protein COBRA precursor, putative [Ricinus communis]
10 Hb_012286_020 0.1602786616 - - PREDICTED: uncharacterized protein LOC105648960 [Jatropha curcas]
11 Hb_004003_030 0.1611268042 - - conserved hypothetical protein [Ricinus communis]
12 Hb_011671_310 0.1621198291 - - PREDICTED: polycomb group protein EMBRYONIC FLOWER 2 [Jatropha curcas]
13 Hb_023765_020 0.1632183794 - - PREDICTED: putative SNAP25 homologous protein SNAP30 [Populus euphratica]
14 Hb_002615_070 0.1645937508 - - PREDICTED: uncharacterized protein LOC105628992 isoform X1 [Jatropha curcas]
15 Hb_003688_050 0.1664505614 - - PREDICTED: uncharacterized protein LOC105640616 isoform X2 [Jatropha curcas]
16 Hb_001191_080 0.166775851 - - protein with unknown function [Ricinus communis]
17 Hb_100790_010 0.1668866182 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000120_250 0.1679178368 - - PREDICTED: uncharacterized protein LOC105630152 isoform X1 [Jatropha curcas]
19 Hb_003038_250 0.1682334376 - - PREDICTED: uncharacterized protein LOC105650395 [Jatropha curcas]
20 Hb_005333_060 0.1683226051 - - PREDICTED: uncharacterized protein LOC105630688 [Jatropha curcas]

Gene co-expression network

sample Hb_000197_200 Hb_000197_200 Hb_002783_220 Hb_002783_220 Hb_000197_200--Hb_002783_220 Hb_001950_070 Hb_001950_070 Hb_000197_200--Hb_001950_070 Hb_000526_010 Hb_000526_010 Hb_000197_200--Hb_000526_010 Hb_002333_070 Hb_002333_070 Hb_000197_200--Hb_002333_070 Hb_000566_050 Hb_000566_050 Hb_000197_200--Hb_000566_050 Hb_094121_010 Hb_094121_010 Hb_000197_200--Hb_094121_010 Hb_006775_120 Hb_006775_120 Hb_002783_220--Hb_006775_120 Hb_000364_170 Hb_000364_170 Hb_002783_220--Hb_000364_170 Hb_000000_330 Hb_000000_330 Hb_002783_220--Hb_000000_330 Hb_005333_060 Hb_005333_060 Hb_002783_220--Hb_005333_060 Hb_019654_050 Hb_019654_050 Hb_002783_220--Hb_019654_050 Hb_000987_040 Hb_000987_040 Hb_002783_220--Hb_000987_040 Hb_001077_070 Hb_001077_070 Hb_001950_070--Hb_001077_070 Hb_001191_080 Hb_001191_080 Hb_001950_070--Hb_001191_080 Hb_004096_160 Hb_004096_160 Hb_001950_070--Hb_004096_160 Hb_004712_190 Hb_004712_190 Hb_001950_070--Hb_004712_190 Hb_003449_100 Hb_003449_100 Hb_001950_070--Hb_003449_100 Hb_100790_010 Hb_100790_010 Hb_001950_070--Hb_100790_010 Hb_004163_030 Hb_004163_030 Hb_000526_010--Hb_004163_030 Hb_011828_040 Hb_011828_040 Hb_000526_010--Hb_011828_040 Hb_007426_220 Hb_007426_220 Hb_000526_010--Hb_007426_220 Hb_004155_020 Hb_004155_020 Hb_000526_010--Hb_004155_020 Hb_000526_010--Hb_002783_220 Hb_002662_040 Hb_002662_040 Hb_000526_010--Hb_002662_040 Hb_002333_070--Hb_000566_050 Hb_021576_150 Hb_021576_150 Hb_002333_070--Hb_021576_150 Hb_027506_040 Hb_027506_040 Hb_002333_070--Hb_027506_040 Hb_000122_190 Hb_000122_190 Hb_002333_070--Hb_000122_190 Hb_010872_070 Hb_010872_070 Hb_002333_070--Hb_010872_070 Hb_004965_110 Hb_004965_110 Hb_002333_070--Hb_004965_110 Hb_012286_020 Hb_012286_020 Hb_000566_050--Hb_012286_020 Hb_004003_030 Hb_004003_030 Hb_000566_050--Hb_004003_030 Hb_000566_050--Hb_021576_150 Hb_001799_160 Hb_001799_160 Hb_000566_050--Hb_001799_160 Hb_171554_010 Hb_171554_010 Hb_000566_050--Hb_171554_010 Hb_004032_320 Hb_004032_320 Hb_000566_050--Hb_004032_320 Hb_003430_050 Hb_003430_050 Hb_094121_010--Hb_003430_050 Hb_081599_010 Hb_081599_010 Hb_094121_010--Hb_081599_010 Hb_001633_200 Hb_001633_200 Hb_094121_010--Hb_001633_200 Hb_000072_300 Hb_000072_300 Hb_094121_010--Hb_000072_300 Hb_067130_010 Hb_067130_010 Hb_094121_010--Hb_067130_010 Hb_094121_010--Hb_005333_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0549855 0.0618452 0.259824 0.148565 0.0323247 0.0684747
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0250098 0.0590331 0.111652 0.0391797 0.0414671

CAGE analysis