Hb_000197_210

Information

Type -
Description -
Location Contig197: 239664-246214
Sequence    

Annotation

kegg
ID rcu:RCOM_1448110
description phosphatidylinositol transporter, putative
nr
ID XP_002512943.1
description phosphatidylinositol transporter, putative [Ricinus communis]
swissprot
ID F4IHJ0
description Phosphatidylinositol/phosphatidylcholine transfer protein SFH8 OS=Arabidopsis thaliana GN=SFH8 PE=2 SV=1
trembl
ID B9RH84
description Phosphatidylinositol transporter, putative OS=Ricinus communis GN=RCOM_1448110 PE=4 SV=1
Gene Ontology
ID GO:0005622
description phosphatidylinositol phosphatidylcholine transfer protein sfh8-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19774: 239734-246173
cDNA
(Sanger)
(ID:Location)		 024_E18.ab1: 244874-246173

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000197_210 0.0 - - phosphatidylinositol transporter, putative [Ricinus communis]
2 Hb_000042_270 0.088059202 - - myosin vIII, putative [Ricinus communis]
3 Hb_000236_380 0.0891983773 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
4 Hb_008406_140 0.0903519065 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
5 Hb_001863_110 0.0934309926 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
6 Hb_000497_230 0.0965543425 - - PREDICTED: probable protein S-acyltransferase 6 [Jatropha curcas]
7 Hb_006816_390 0.0979916226 - - protein phosphatase, putative [Ricinus communis]
8 Hb_000606_080 0.100513052 - - PREDICTED: RNA-binding protein Nova-2-like [Malus domestica]
9 Hb_000322_100 0.1029286846 - - PREDICTED: casein kinase I isoform delta-like [Jatropha curcas]
10 Hb_000034_050 0.1046905746 - - PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]
11 Hb_001268_210 0.1050021657 - - zinc finger protein, putative [Ricinus communis]
12 Hb_002774_070 0.1088342638 - - hypothetical protein EUGRSUZ_F00307 [Eucalyptus grandis]
13 Hb_000123_090 0.109736526 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os03g0620400-like [Jatropha curcas]
14 Hb_018954_020 0.109802897 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH13 [Jatropha curcas]
15 Hb_002529_060 0.1101598774 - - PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282107 [Jatropha curcas]
16 Hb_000797_050 0.1102150431 - - PREDICTED: uncharacterized protein LOC105645916 [Jatropha curcas]
17 Hb_003376_050 0.110424109 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
18 Hb_015763_030 0.1131461598 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001047_030 0.1146778702 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
20 Hb_006951_020 0.1149673073 - - Rop3 [Hevea brasiliensis]

Gene co-expression network

sample Hb_000197_210 Hb_000197_210 Hb_000042_270 Hb_000042_270 Hb_000197_210--Hb_000042_270 Hb_000236_380 Hb_000236_380 Hb_000197_210--Hb_000236_380 Hb_008406_140 Hb_008406_140 Hb_000197_210--Hb_008406_140 Hb_001863_110 Hb_001863_110 Hb_000197_210--Hb_001863_110 Hb_000497_230 Hb_000497_230 Hb_000197_210--Hb_000497_230 Hb_006816_390 Hb_006816_390 Hb_000197_210--Hb_006816_390 Hb_000042_270--Hb_006816_390 Hb_000679_130 Hb_000679_130 Hb_000042_270--Hb_000679_130 Hb_000034_050 Hb_000034_050 Hb_000042_270--Hb_000034_050 Hb_000042_270--Hb_000236_380 Hb_000836_630 Hb_000836_630 Hb_000042_270--Hb_000836_630 Hb_002400_470 Hb_002400_470 Hb_000236_380--Hb_002400_470 Hb_008864_110 Hb_008864_110 Hb_000236_380--Hb_008864_110 Hb_002255_050 Hb_002255_050 Hb_000236_380--Hb_002255_050 Hb_001348_050 Hb_001348_050 Hb_000236_380--Hb_001348_050 Hb_007592_030 Hb_007592_030 Hb_000236_380--Hb_007592_030 Hb_057878_010 Hb_057878_010 Hb_000236_380--Hb_057878_010 Hb_018954_020 Hb_018954_020 Hb_008406_140--Hb_018954_020 Hb_001279_330 Hb_001279_330 Hb_008406_140--Hb_001279_330 Hb_000199_080 Hb_000199_080 Hb_008406_140--Hb_000199_080 Hb_002159_040 Hb_002159_040 Hb_008406_140--Hb_002159_040 Hb_003716_020 Hb_003716_020 Hb_008406_140--Hb_003716_020 Hb_001863_110--Hb_000034_050 Hb_000335_010 Hb_000335_010 Hb_001863_110--Hb_000335_010 Hb_003581_120 Hb_003581_120 Hb_001863_110--Hb_003581_120 Hb_010222_030 Hb_010222_030 Hb_001863_110--Hb_010222_030 Hb_002400_180 Hb_002400_180 Hb_001863_110--Hb_002400_180 Hb_002174_060 Hb_002174_060 Hb_001863_110--Hb_002174_060 Hb_000497_230--Hb_018954_020 Hb_000497_230--Hb_008406_140 Hb_000497_230--Hb_001279_330 Hb_004143_070 Hb_004143_070 Hb_000497_230--Hb_004143_070 Hb_000497_230--Hb_002159_040 Hb_007477_080 Hb_007477_080 Hb_006816_390--Hb_007477_080 Hb_006816_390--Hb_000034_050 Hb_000134_090 Hb_000134_090 Hb_006816_390--Hb_000134_090 Hb_002529_060 Hb_002529_060 Hb_006816_390--Hb_002529_060 Hb_001100_050 Hb_001100_050 Hb_006816_390--Hb_001100_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
148.706 38.9508 48.8124 89.9445 135.432 167.226
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
68.8477 39.4615 68.6236 25.5391 40.28

CAGE analysis