Hb_000197_300

Information

Type -
Description -
Location Contig197: 383663-384655
Sequence    

Annotation

kegg
ID rcu:RCOM_1448770
description Late embryogenesis abundant protein, putative
nr
ID AGC51773.1
description dehydrin protein [Manihot esculenta]
swissprot
ID P21298
description Late embryogenesis abundant protein OS=Raphanus sativus PE=2 SV=1
trembl
ID V9M5C3
description Dehydrin protein OS=Manihot esculenta GN=LTI30 PE=2 SV=1
Gene Ontology
ID GO:0050896
description late embryogenesis abundant

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19784: 377859-383282 , PASA_asmbl_19786: 382831-383018
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000197_300 0.0 - - dehydrin protein [Manihot esculenta]
2 Hb_153365_010 0.2700897165 - - PREDICTED: uncharacterized protein LOC104236681 [Nicotiana sylvestris]
3 Hb_005714_110 0.2763088142 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA10 [Jatropha curcas]
4 Hb_000982_140 0.2864916447 - - histidine kinase 1 plant, putative [Ricinus communis]
5 Hb_043674_060 0.2976959669 - - PREDICTED: uncharacterized protein LOC104240691 [Nicotiana sylvestris]
6 Hb_004108_030 0.3051294295 - - -
7 Hb_052983_010 0.3455027214 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
8 Hb_012586_030 0.3557081565 - - hypothetical protein CICLE_v10014868mg [Citrus clementina]
9 Hb_000160_030 0.3575574593 - - putative S-adenosylmethionine-dependent methyltransferase [Morus notabilis]
10 Hb_001342_050 0.3698423294 - - -
11 Hb_003540_130 0.3727717634 - - -
12 Hb_011063_020 0.3836200661 - - PREDICTED: ribosomal L1 domain-containing protein 1-like [Jatropha curcas]
13 Hb_001817_030 0.3910824078 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
14 Hb_003688_170 0.395500857 - - PREDICTED: presenilin-like protein At2g29900 isoform X2 [Cucumis sativus]
15 Hb_001318_090 0.3981556687 - - PREDICTED: zinc finger protein 598 [Jatropha curcas]
16 Hb_012725_080 0.3982124266 - - -
17 Hb_005396_160 0.4000330662 - - PREDICTED: clavaminate synthase-like protein At3g21360 [Jatropha curcas]
18 Hb_004757_030 0.4015300912 - - -
19 Hb_005078_030 0.4017141635 - - -
20 Hb_004195_250 0.4047251506 - - hypothetical protein PRUPE_ppa015658mg [Prunus persica]

Gene co-expression network

sample Hb_000197_300 Hb_000197_300 Hb_153365_010 Hb_153365_010 Hb_000197_300--Hb_153365_010 Hb_005714_110 Hb_005714_110 Hb_000197_300--Hb_005714_110 Hb_000982_140 Hb_000982_140 Hb_000197_300--Hb_000982_140 Hb_043674_060 Hb_043674_060 Hb_000197_300--Hb_043674_060 Hb_004108_030 Hb_004108_030 Hb_000197_300--Hb_004108_030 Hb_052983_010 Hb_052983_010 Hb_000197_300--Hb_052983_010 Hb_153365_010--Hb_005714_110 Hb_153365_010--Hb_043674_060 Hb_153365_010--Hb_052983_010 Hb_002357_050 Hb_002357_050 Hb_153365_010--Hb_002357_050 Hb_001930_020 Hb_001930_020 Hb_153365_010--Hb_001930_020 Hb_005714_110--Hb_043674_060 Hb_005714_110--Hb_052983_010 Hb_005714_110--Hb_001930_020 Hb_005357_090 Hb_005357_090 Hb_005714_110--Hb_005357_090 Hb_000803_140 Hb_000803_140 Hb_000982_140--Hb_000803_140 Hb_171065_010 Hb_171065_010 Hb_000982_140--Hb_171065_010 Hb_000590_030 Hb_000590_030 Hb_000982_140--Hb_000590_030 Hb_134015_010 Hb_134015_010 Hb_000982_140--Hb_134015_010 Hb_000060_120 Hb_000060_120 Hb_000982_140--Hb_000060_120 Hb_124518_010 Hb_124518_010 Hb_043674_060--Hb_124518_010 Hb_043674_060--Hb_005357_090 Hb_043674_060--Hb_001930_020 Hb_000735_150 Hb_000735_150 Hb_043674_060--Hb_000735_150 Hb_004108_030--Hb_002357_050 Hb_004108_030--Hb_001930_020 Hb_005078_030 Hb_005078_030 Hb_004108_030--Hb_005078_030 Hb_004108_030--Hb_005357_090 Hb_004757_030 Hb_004757_030 Hb_004108_030--Hb_004757_030 Hb_004108_030--Hb_124518_010 Hb_005396_160 Hb_005396_160 Hb_052983_010--Hb_005396_160 Hb_012725_080 Hb_012725_080 Hb_052983_010--Hb_012725_080 Hb_001318_090 Hb_001318_090 Hb_052983_010--Hb_001318_090 Hb_052983_010--Hb_004757_030 Hb_052983_010--Hb_005078_030 Hb_042211_010 Hb_042211_010 Hb_052983_010--Hb_042211_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.05053 0 0.0303104 0 0.040158 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.128217 0 0

CAGE analysis