Hb_000198_070

Information

Type -
Description -
Location Contig198: 183251-184539
Sequence    

Annotation

kegg
ID rcu:RCOM_0813860
description hypothetical protein
nr
ID XP_012066894.1
description PREDICTED: cyclin-dependent kinase inhibitor 7-like [Jatropha curcas]
swissprot
ID Q94CL9
description Cyclin-dependent kinase inhibitor 7 OS=Arabidopsis thaliana GN=KRP7 PE=1 SV=2
trembl
ID A0A067L1I1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01640 PE=4 SV=1
Gene Ontology
ID GO:0005634
description cyclin dependent kinase inhibitor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19891: 183071-184635
cDNA
(Sanger)
(ID:Location)		 047_G02.ab1: 183180-184635

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000198_070 0.0 - - PREDICTED: cyclin-dependent kinase inhibitor 7-like [Jatropha curcas]
2 Hb_000606_080 0.1200422914 - - PREDICTED: RNA-binding protein Nova-2-like [Malus domestica]
3 Hb_012132_040 0.1201194224 - - PREDICTED: eukaryotic translation initiation factor 3 subunit H [Jatropha curcas]
4 Hb_013691_020 0.1257101533 - - transcription initiation factor iie, alpha subunit, putative [Ricinus communis]
5 Hb_002067_020 0.1265659517 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000364_080 0.1296251134 - - PREDICTED: OTU domain-containing protein 3 isoform X1 [Jatropha curcas]
7 Hb_000523_090 0.1324722152 - - PREDICTED: protein DJ-1 homolog D-like [Populus euphratica]
8 Hb_000364_060 0.1362118455 - - JHL03K20.4 [Jatropha curcas]
9 Hb_000797_050 0.1364618597 - - PREDICTED: uncharacterized protein LOC105645916 [Jatropha curcas]
10 Hb_001863_260 0.1365194696 - - ubiquitin-protein ligase, putative [Ricinus communis]
11 Hb_000486_060 0.1391188064 - - PREDICTED: immediate early response 3-interacting protein 1-like isoform X2 [Glycine max]
12 Hb_005085_020 0.1394659278 - - hypothetical protein B456_001G193200 [Gossypium raimondii]
13 Hb_031862_180 0.1406005862 - - PREDICTED: uncharacterized protein LOC105644669 [Jatropha curcas]
14 Hb_003363_010 0.1409961251 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004846_040 0.1413944536 transcription factor TF Family: HMG -
16 Hb_002737_070 0.1423915343 - - PREDICTED: phagocyte signaling-impaired protein [Jatropha curcas]
17 Hb_000915_110 0.1434032089 - - PREDICTED: peptide methionine sulfoxide reductase A5 [Jatropha curcas]
18 Hb_003376_050 0.1437897211 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
19 Hb_001752_040 0.1452563662 - - hypothetical protein EUGRSUZ_C02580 [Eucalyptus grandis]
20 Hb_019813_010 0.1454827757 - - PREDICTED: uncharacterized protein LOC105646947 [Jatropha curcas]

Gene co-expression network

sample Hb_000198_070 Hb_000198_070 Hb_000606_080 Hb_000606_080 Hb_000198_070--Hb_000606_080 Hb_012132_040 Hb_012132_040 Hb_000198_070--Hb_012132_040 Hb_013691_020 Hb_013691_020 Hb_000198_070--Hb_013691_020 Hb_002067_020 Hb_002067_020 Hb_000198_070--Hb_002067_020 Hb_000364_080 Hb_000364_080 Hb_000198_070--Hb_000364_080 Hb_000523_090 Hb_000523_090 Hb_000198_070--Hb_000523_090 Hb_002067_120 Hb_002067_120 Hb_000606_080--Hb_002067_120 Hb_041392_010 Hb_041392_010 Hb_000606_080--Hb_041392_010 Hb_003502_080 Hb_003502_080 Hb_000606_080--Hb_003502_080 Hb_000197_210 Hb_000197_210 Hb_000606_080--Hb_000197_210 Hb_000679_150 Hb_000679_150 Hb_000606_080--Hb_000679_150 Hb_006951_020 Hb_006951_020 Hb_000606_080--Hb_006951_020 Hb_007668_040 Hb_007668_040 Hb_012132_040--Hb_007668_040 Hb_001341_050 Hb_001341_050 Hb_012132_040--Hb_001341_050 Hb_000364_060 Hb_000364_060 Hb_012132_040--Hb_000364_060 Hb_002942_080 Hb_002942_080 Hb_012132_040--Hb_002942_080 Hb_003581_020 Hb_003581_020 Hb_012132_040--Hb_003581_020 Hb_032496_030 Hb_032496_030 Hb_012132_040--Hb_032496_030 Hb_002737_070 Hb_002737_070 Hb_013691_020--Hb_002737_070 Hb_000062_430 Hb_000062_430 Hb_013691_020--Hb_000062_430 Hb_013691_020--Hb_000364_080 Hb_002007_180 Hb_002007_180 Hb_013691_020--Hb_002007_180 Hb_005608_030 Hb_005608_030 Hb_013691_020--Hb_005608_030 Hb_002067_020--Hb_000523_090 Hb_002067_020--Hb_000364_080 Hb_031862_180 Hb_031862_180 Hb_002067_020--Hb_031862_180 Hb_003363_010 Hb_003363_010 Hb_002067_020--Hb_003363_010 Hb_002067_020--Hb_000364_060 Hb_134364_010 Hb_134364_010 Hb_002067_020--Hb_134364_010 Hb_002942_160 Hb_002942_160 Hb_000364_080--Hb_002942_160 Hb_000364_080--Hb_000523_090 Hb_002044_060 Hb_002044_060 Hb_000364_080--Hb_002044_060 Hb_000364_080--Hb_134364_010 Hb_010642_030 Hb_010642_030 Hb_000364_080--Hb_010642_030 Hb_002174_060 Hb_002174_060 Hb_000523_090--Hb_002174_060 Hb_010423_020 Hb_010423_020 Hb_000523_090--Hb_010423_020 Hb_000523_090--Hb_000364_060 Hb_004195_280 Hb_004195_280 Hb_000523_090--Hb_004195_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.50862 0.82662 1.74065 2.18784 2.57843 6.39522
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.69169 1.62513 0.650463 0.694829 1.58436

CAGE analysis