Hb_000199_080

Information

Type -
Description -
Location Contig199: 176385-189557
Sequence    

Annotation

kegg
ID rcu:RCOM_0655980
description hypothetical protein
nr
ID XP_002533442.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q6GNT2
description UPF0454 protein C12orf49 homolog OS=Xenopus laevis PE=2 SV=1
trembl
ID B9T5C3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0655980 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19965: 176710-189624 , PASA_asmbl_19966: 176710-189624
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000199_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007668_020 0.0759129224 - - PREDICTED: uncharacterized protein LOC105631102 [Jatropha curcas]
3 Hb_007757_100 0.0904635733 - - PREDICTED: ER membrane protein complex subunit 3-like [Jatropha curcas]
4 Hb_079326_010 0.0957587134 - - PREDICTED: uncharacterized protein LOC105630719 isoform X1 [Jatropha curcas]
5 Hb_003581_020 0.1012132089 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
6 Hb_008406_140 0.1020327813 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
7 Hb_002159_040 0.1027620973 - - hypothetical protein PRUPE_ppa001563mg [Prunus persica]
8 Hb_005129_050 0.1034980761 - - PREDICTED: probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Jatropha curcas]
9 Hb_002942_080 0.1070116561 - - PREDICTED: signal recognition particle subunit SRP68 [Jatropha curcas]
10 Hb_000329_490 0.1073283985 - - hypothetical protein JCGZ_14582 [Jatropha curcas]
11 Hb_001279_330 0.1078006267 - - Protein bem46, putative [Ricinus communis]
12 Hb_007668_040 0.1082742944 - - PREDICTED: uncharacterized protein LOC103409082 [Malus domestica]
13 Hb_012132_040 0.1088981708 - - PREDICTED: eukaryotic translation initiation factor 3 subunit H [Jatropha curcas]
14 Hb_004218_070 0.1112101433 - - annexin [Manihot esculenta]
15 Hb_005000_270 0.112431422 - - unnamed protein product [Vitis vinifera]
16 Hb_003716_020 0.1125707979 - - PREDICTED: putative vesicle-associated membrane protein 726 [Jatropha curcas]
17 Hb_004881_050 0.1140192731 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
18 Hb_001196_070 0.1148606106 - - nucleolar protein nop56, putative [Ricinus communis]
19 Hb_000372_040 0.1172327939 - - WD-repeat protein, putative [Ricinus communis]
20 Hb_007534_040 0.117490958 - - PREDICTED: uncharacterized protein LOC105635538 [Jatropha curcas]

Gene co-expression network

sample Hb_000199_080 Hb_000199_080 Hb_007668_020 Hb_007668_020 Hb_000199_080--Hb_007668_020 Hb_007757_100 Hb_007757_100 Hb_000199_080--Hb_007757_100 Hb_079326_010 Hb_079326_010 Hb_000199_080--Hb_079326_010 Hb_003581_020 Hb_003581_020 Hb_000199_080--Hb_003581_020 Hb_008406_140 Hb_008406_140 Hb_000199_080--Hb_008406_140 Hb_002159_040 Hb_002159_040 Hb_000199_080--Hb_002159_040 Hb_001278_060 Hb_001278_060 Hb_007668_020--Hb_001278_060 Hb_005129_050 Hb_005129_050 Hb_007668_020--Hb_005129_050 Hb_000213_070 Hb_000213_070 Hb_007668_020--Hb_000213_070 Hb_007668_020--Hb_003581_020 Hb_003716_020 Hb_003716_020 Hb_007668_020--Hb_003716_020 Hb_000181_310 Hb_000181_310 Hb_007757_100--Hb_000181_310 Hb_003580_040 Hb_003580_040 Hb_007757_100--Hb_003580_040 Hb_001279_330 Hb_001279_330 Hb_007757_100--Hb_001279_330 Hb_007757_100--Hb_007668_020 Hb_009913_050 Hb_009913_050 Hb_007757_100--Hb_009913_050 Hb_004881_050 Hb_004881_050 Hb_079326_010--Hb_004881_050 Hb_000372_040 Hb_000372_040 Hb_079326_010--Hb_000372_040 Hb_002475_050 Hb_002475_050 Hb_079326_010--Hb_002475_050 Hb_011644_020 Hb_011644_020 Hb_079326_010--Hb_011644_020 Hb_005368_010 Hb_005368_010 Hb_079326_010--Hb_005368_010 Hb_000134_360 Hb_000134_360 Hb_079326_010--Hb_000134_360 Hb_003581_020--Hb_003716_020 Hb_083043_010 Hb_083043_010 Hb_003581_020--Hb_083043_010 Hb_007668_040 Hb_007668_040 Hb_003581_020--Hb_007668_040 Hb_003581_020--Hb_004881_050 Hb_003581_020--Hb_000372_040 Hb_000197_210 Hb_000197_210 Hb_008406_140--Hb_000197_210 Hb_018954_020 Hb_018954_020 Hb_008406_140--Hb_018954_020 Hb_008406_140--Hb_001279_330 Hb_008406_140--Hb_002159_040 Hb_008406_140--Hb_003716_020 Hb_000244_240 Hb_000244_240 Hb_002159_040--Hb_000244_240 Hb_011497_010 Hb_011497_010 Hb_002159_040--Hb_011497_010 Hb_000441_160 Hb_000441_160 Hb_002159_040--Hb_000441_160 Hb_004143_070 Hb_004143_070 Hb_002159_040--Hb_004143_070 Hb_002159_030 Hb_002159_030 Hb_002159_040--Hb_002159_030 Hb_000329_490 Hb_000329_490 Hb_002159_040--Hb_000329_490
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.89779 1.47542 2.74127 3.24366 11.2957 13.979
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.97144 2.43475 1.87072 3.08288 2.01391

CAGE analysis