Hb_000200_020

Information

Type -
Description -
Location Contig200: 48238-50917
Sequence    

Annotation

kegg
ID rcu:RCOM_0275590
description hypothetical protein
nr
ID XP_012075695.1
description PREDICTED: uncharacterized protein LOC105636907 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KT26
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09287 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20178: 48435-50700
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000200_020 0.0 - - PREDICTED: uncharacterized protein LOC105636907 [Jatropha curcas]
2 Hb_000116_270 0.0555970921 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
3 Hb_000599_250 0.0627936854 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
4 Hb_001366_370 0.0645494196 - - PREDICTED: aarF domain-containing protein kinase 4 isoform X1 [Jatropha curcas]
5 Hb_001159_130 0.0651936827 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
6 Hb_000783_010 0.0656756207 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
7 Hb_001218_030 0.0663885996 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
8 Hb_000260_350 0.0671190558 - - conserved hypothetical protein [Ricinus communis]
9 Hb_010964_040 0.0675995113 - - Eukaryotic initiation factor 4A-3 [Gossypium arboreum]
10 Hb_008841_020 0.0696565814 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631075 isoform X1 [Jatropha curcas]
11 Hb_001828_150 0.0701579459 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
12 Hb_011628_060 0.0724931881 - - Adenosine 3'-phospho 5'-phosphosulfate transporter, putative [Ricinus communis]
13 Hb_004934_100 0.0729400729 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002641_060 0.0732718276 - - prefoldin subunit, putative [Ricinus communis]
15 Hb_001016_120 0.0745360418 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]
16 Hb_000050_200 0.0753800047 - - ergosterol biosynthetic protein 28 [Jatropha curcas]
17 Hb_000666_100 0.0756687571 - - Actin-related protein 2/3 complex subunit 2 isoform 2 [Theobroma cacao]
18 Hb_001300_150 0.0761943383 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
19 Hb_007676_080 0.0771973516 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14-like [Jatropha curcas]
20 Hb_001711_020 0.0772525401 - - PREDICTED: AP-2 complex subunit mu [Jatropha curcas]

Gene co-expression network

sample Hb_000200_020 Hb_000200_020 Hb_000116_270 Hb_000116_270 Hb_000200_020--Hb_000116_270 Hb_000599_250 Hb_000599_250 Hb_000200_020--Hb_000599_250 Hb_001366_370 Hb_001366_370 Hb_000200_020--Hb_001366_370 Hb_001159_130 Hb_001159_130 Hb_000200_020--Hb_001159_130 Hb_000783_010 Hb_000783_010 Hb_000200_020--Hb_000783_010 Hb_001218_030 Hb_001218_030 Hb_000200_020--Hb_001218_030 Hb_000116_270--Hb_001159_130 Hb_001016_120 Hb_001016_120 Hb_000116_270--Hb_001016_120 Hb_084646_010 Hb_084646_010 Hb_000116_270--Hb_084646_010 Hb_006478_020 Hb_006478_020 Hb_000116_270--Hb_006478_020 Hb_000477_060 Hb_000477_060 Hb_000116_270--Hb_000477_060 Hb_004934_100 Hb_004934_100 Hb_000599_250--Hb_004934_100 Hb_001711_020 Hb_001711_020 Hb_000599_250--Hb_001711_020 Hb_000375_350 Hb_000375_350 Hb_000599_250--Hb_000375_350 Hb_001300_150 Hb_001300_150 Hb_000599_250--Hb_001300_150 Hb_005496_140 Hb_005496_140 Hb_000599_250--Hb_005496_140 Hb_002641_060 Hb_002641_060 Hb_000599_250--Hb_002641_060 Hb_002053_140 Hb_002053_140 Hb_001366_370--Hb_002053_140 Hb_001366_370--Hb_000783_010 Hb_001427_160 Hb_001427_160 Hb_001366_370--Hb_001427_160 Hb_009787_030 Hb_009787_030 Hb_001366_370--Hb_009787_030 Hb_000510_300 Hb_000510_300 Hb_001366_370--Hb_000510_300 Hb_155159_020 Hb_155159_020 Hb_001159_130--Hb_155159_020 Hb_003177_030 Hb_003177_030 Hb_001159_130--Hb_003177_030 Hb_000603_150 Hb_000603_150 Hb_001159_130--Hb_000603_150 Hb_000019_030 Hb_000019_030 Hb_001159_130--Hb_000019_030 Hb_000783_010--Hb_000510_300 Hb_000720_040 Hb_000720_040 Hb_000783_010--Hb_000720_040 Hb_011628_060 Hb_011628_060 Hb_000783_010--Hb_011628_060 Hb_000331_180 Hb_000331_180 Hb_000783_010--Hb_000331_180 Hb_000853_150 Hb_000853_150 Hb_001218_030--Hb_000853_150 Hb_000920_200 Hb_000920_200 Hb_001218_030--Hb_000920_200 Hb_001828_150 Hb_001828_150 Hb_001218_030--Hb_001828_150 Hb_001123_040 Hb_001123_040 Hb_001218_030--Hb_001123_040 Hb_000483_260 Hb_000483_260 Hb_001218_030--Hb_000483_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.96433 5.32393 9.22758 13.4007 6.57154 10.0521
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8874 12.339 12.1334 10.6738 7.42325

CAGE analysis