Hb_000200_030

Information

Type -
Description -
Location Contig200: 52046-57619
Sequence    

Annotation

kegg
ID tcc:TCM_009037
description Sec-independent periplasmic protein translocase
nr
ID XP_012075694.1
description PREDICTED: sec-independent protein translocase protein TATC, chloroplastic [Jatropha curcas]
swissprot
ID Q94G17
description Sec-independent protein translocase protein TATC, chloroplastic OS=Pisum sativum GN=TATC PE=1 SV=1
trembl
ID A0A067KRT6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09288 PE=3 SV=1
Gene Ontology
ID GO:0031361
description sec-independent protein translocase protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20180: 52142-57609
cDNA
(Sanger)
(ID:Location)		 039_I08.ab1: 53186-57608

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000200_030 0.0 - - PREDICTED: sec-independent protein translocase protein TATC, chloroplastic [Jatropha curcas]
2 Hb_002374_240 0.0732869467 - - nucellin, putative [Ricinus communis]
3 Hb_000224_160 0.0801093832 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
4 Hb_000184_170 0.0906994668 - - hypothetical protein RCOM_1213430 [Ricinus communis]
5 Hb_004994_380 0.0918954844 - - hypothetical protein JCGZ_14410 [Jatropha curcas]
6 Hb_000915_260 0.0943451906 - - PREDICTED: uncharacterized protein LOC105628514 isoform X1 [Jatropha curcas]
7 Hb_022693_140 0.0982398653 - - PREDICTED: uncharacterized protein LOC105632654 isoform X1 [Jatropha curcas]
8 Hb_001584_200 0.0999283303 - - PREDICTED: Golgi apparatus membrane protein-like protein ECHIDNA [Jatropha curcas]
9 Hb_000181_240 0.1026782515 - - PREDICTED: uncharacterized protein LOC105637672 [Jatropha curcas]
10 Hb_000076_130 0.1040651781 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
11 Hb_001322_140 0.1042910332 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic [Jatropha curcas]
12 Hb_012022_150 0.1072894546 - - PREDICTED: protein root UVB sensitive 5 [Jatropha curcas]
13 Hb_000062_370 0.1088290475 - - beta-ketoacyl-ACP reductase [Vernicia fordii]
14 Hb_001279_030 0.1098298215 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
15 Hb_010710_070 0.1098835509 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
16 Hb_007811_030 0.1112326311 - - ABC transporter family protein [Hevea brasiliensis]
17 Hb_001141_020 0.1112809665 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
18 Hb_004369_020 0.1116318999 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like [Jatropha curcas]
19 Hb_024570_010 0.113257056 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
20 Hb_000302_180 0.1143309649 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000200_030 Hb_000200_030 Hb_002374_240 Hb_002374_240 Hb_000200_030--Hb_002374_240 Hb_000224_160 Hb_000224_160 Hb_000200_030--Hb_000224_160 Hb_000184_170 Hb_000184_170 Hb_000200_030--Hb_000184_170 Hb_004994_380 Hb_004994_380 Hb_000200_030--Hb_004994_380 Hb_000915_260 Hb_000915_260 Hb_000200_030--Hb_000915_260 Hb_022693_140 Hb_022693_140 Hb_000200_030--Hb_022693_140 Hb_002374_240--Hb_000184_170 Hb_002374_240--Hb_000224_160 Hb_001584_200 Hb_001584_200 Hb_002374_240--Hb_001584_200 Hb_000181_240 Hb_000181_240 Hb_002374_240--Hb_000181_240 Hb_000295_080 Hb_000295_080 Hb_002374_240--Hb_000295_080 Hb_000224_160--Hb_001584_200 Hb_012022_150 Hb_012022_150 Hb_000224_160--Hb_012022_150 Hb_000224_160--Hb_022693_140 Hb_011716_130 Hb_011716_130 Hb_000224_160--Hb_011716_130 Hb_002163_040 Hb_002163_040 Hb_000224_160--Hb_002163_040 Hb_000224_160--Hb_000184_170 Hb_003153_010 Hb_003153_010 Hb_000184_170--Hb_003153_010 Hb_000346_060 Hb_000346_060 Hb_000184_170--Hb_000346_060 Hb_001700_010 Hb_001700_010 Hb_000184_170--Hb_001700_010 Hb_008959_010 Hb_008959_010 Hb_000184_170--Hb_008959_010 Hb_000184_170--Hb_022693_140 Hb_001279_030 Hb_001279_030 Hb_000184_170--Hb_001279_030 Hb_010710_070 Hb_010710_070 Hb_004994_380--Hb_010710_070 Hb_000076_130 Hb_000076_130 Hb_004994_380--Hb_000076_130 Hb_001014_160 Hb_001014_160 Hb_004994_380--Hb_001014_160 Hb_188063_020 Hb_188063_020 Hb_004994_380--Hb_188063_020 Hb_001141_020 Hb_001141_020 Hb_004994_380--Hb_001141_020 Hb_004963_030 Hb_004963_030 Hb_004994_380--Hb_004963_030 Hb_009898_050 Hb_009898_050 Hb_000915_260--Hb_009898_050 Hb_002276_170 Hb_002276_170 Hb_000915_260--Hb_002276_170 Hb_000915_260--Hb_001141_020 Hb_168978_030 Hb_168978_030 Hb_000915_260--Hb_168978_030 Hb_006153_070 Hb_006153_070 Hb_000915_260--Hb_006153_070 Hb_001205_120 Hb_001205_120 Hb_000915_260--Hb_001205_120 Hb_022693_140--Hb_012022_150 Hb_000804_040 Hb_000804_040 Hb_022693_140--Hb_000804_040 Hb_029879_010 Hb_029879_010 Hb_022693_140--Hb_029879_010 Hb_000137_040 Hb_000137_040 Hb_022693_140--Hb_000137_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.7396 3.38303 14.2662 10.6383 13.5495 20.3106
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.6172 10.2206 17.3099 9.46361 21.896

CAGE analysis