Hb_000200_040

Information

Type -
Description -
Location Contig200: 60637-61131
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20182: 60821-61324
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000200_040 0.0 - - -
2 Hb_012807_080 0.1362971935 - - hypothetical protein CICLE_v10028099mg [Citrus clementina]
3 Hb_006455_110 0.1411101476 - - bromodomain-containing protein, putative [Ricinus communis]
4 Hb_005965_010 0.1419568114 transcription factor TF Family: MYB-related PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
5 Hb_006455_080 0.1473114821 - - PREDICTED: transcription factor GTE6-like isoform X2 [Nelumbo nucifera]
6 Hb_139859_010 0.1513501375 - - PREDICTED: cell division control protein 48 homolog D-like [Nicotiana sylvestris]
7 Hb_176117_010 0.1548657037 - - Cold-inducible RNA-binding protein [Morus notabilis]
8 Hb_171788_010 0.1567716428 - - hypothetical protein CISIN_1g007892mg [Citrus sinensis]
9 Hb_019282_010 0.1606699836 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
10 Hb_000808_240 0.1606907293 - - -
11 Hb_183980_010 0.1632806697 - - PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
12 Hb_000295_100 0.1635404685 - - -
13 Hb_006455_090 0.166797272 - - PREDICTED: transcription factor GTE1-like [Jatropha curcas]
14 Hb_181320_010 0.1738258861 - - PREDICTED: signal recognition particle 14 kDa protein [Jatropha curcas]
15 Hb_073339_010 0.1758709879 - - hypothetical protein 30 [Hevea brasiliensis]
16 Hb_006723_020 0.1762016386 - - ARF2-B: ADP-ribosylation factor 2-B [Gossypium arboreum]
17 Hb_001722_020 0.1762638846 - - -
18 Hb_000347_150 0.1788542525 - - Nucleolysin TIAR [Morus notabilis]
19 Hb_003299_090 0.1805219579 - - hypothetical protein PRUPE_ppa011647mg [Prunus persica]
20 Hb_134310_020 0.1808127151 - - PREDICTED: putative cytochrome c oxidase subunit 5C-4-like [Citrus sinensis]

Gene co-expression network

sample Hb_000200_040 Hb_000200_040 Hb_012807_080 Hb_012807_080 Hb_000200_040--Hb_012807_080 Hb_006455_110 Hb_006455_110 Hb_000200_040--Hb_006455_110 Hb_005965_010 Hb_005965_010 Hb_000200_040--Hb_005965_010 Hb_006455_080 Hb_006455_080 Hb_000200_040--Hb_006455_080 Hb_139859_010 Hb_139859_010 Hb_000200_040--Hb_139859_010 Hb_176117_010 Hb_176117_010 Hb_000200_040--Hb_176117_010 Hb_012807_080--Hb_006455_110 Hb_001477_010 Hb_001477_010 Hb_012807_080--Hb_001477_010 Hb_006455_090 Hb_006455_090 Hb_012807_080--Hb_006455_090 Hb_002046_040 Hb_002046_040 Hb_012807_080--Hb_002046_040 Hb_003299_090 Hb_003299_090 Hb_012807_080--Hb_003299_090 Hb_003711_040 Hb_003711_040 Hb_012807_080--Hb_003711_040 Hb_006455_110--Hb_005965_010 Hb_006455_110--Hb_006455_090 Hb_006455_110--Hb_006455_080 Hb_000295_100 Hb_000295_100 Hb_006455_110--Hb_000295_100 Hb_012286_050 Hb_012286_050 Hb_006455_110--Hb_012286_050 Hb_073339_010 Hb_073339_010 Hb_005965_010--Hb_073339_010 Hb_106005_010 Hb_106005_010 Hb_005965_010--Hb_106005_010 Hb_005965_010--Hb_012807_080 Hb_005965_010--Hb_006455_080 Hb_005965_010--Hb_006455_090 Hb_006455_080--Hb_006455_090 Hb_000248_050 Hb_000248_050 Hb_006455_080--Hb_000248_050 Hb_006455_080--Hb_003711_040 Hb_006455_080--Hb_000295_100 Hb_000453_080 Hb_000453_080 Hb_006455_080--Hb_000453_080 Hb_171788_010 Hb_171788_010 Hb_139859_010--Hb_171788_010 Hb_139859_010--Hb_003299_090 Hb_005914_090 Hb_005914_090 Hb_139859_010--Hb_005914_090 Hb_139859_010--Hb_000453_080 Hb_000270_020 Hb_000270_020 Hb_139859_010--Hb_000270_020 Hb_139859_010--Hb_006455_080 Hb_181320_010 Hb_181320_010 Hb_176117_010--Hb_181320_010 Hb_005016_150 Hb_005016_150 Hb_176117_010--Hb_005016_150 Hb_000270_500 Hb_000270_500 Hb_176117_010--Hb_000270_500 Hb_144898_010 Hb_144898_010 Hb_176117_010--Hb_144898_010 Hb_183980_010 Hb_183980_010 Hb_176117_010--Hb_183980_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.90691 2.60949 0.53821 1.7405 5.78704 20.2229
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.33393 2.94891 2.50046 1.8922 0

CAGE analysis