Hb_000200_050

Information

Type -
Description -
Location Contig200: 61275-62888
Sequence    

Annotation

kegg
ID rcu:RCOM_0577740
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002526312.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID P0C7Q9
description Pentatricopeptide repeat-containing protein At1g22960, mitochondrial OS=Arabidopsis thaliana GN=At1g22960 PE=2 SV=1
trembl
ID B9SJZ3
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0577740 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20182: 60821-61324 , PASA_asmbl_20183: 62036-62595
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000200_050 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_006816_140 0.060040223 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09820 [Jatropha curcas]
3 Hb_001158_140 0.0659518877 - - glutamate-1-semialdehyde 2,1-aminomutase, putative [Ricinus communis]
4 Hb_004976_030 0.0716401849 - - hypothetical protein POPTR_0005s04700g [Populus trichocarpa]
5 Hb_016065_010 0.0741120171 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08305 [Jatropha curcas]
6 Hb_003996_020 0.0749257216 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_002835_410 0.0806426724 - - clathrin coat assembly protein ap-1, putative [Ricinus communis]
8 Hb_006922_110 0.0822981017 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
9 Hb_000205_270 0.083054277 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]
10 Hb_000406_220 0.0847714671 - - hypothetical protein POPTR_0005s04700g [Populus trichocarpa]
11 Hb_001811_020 0.087569314 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004109_190 0.0879448861 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 25-like isoform X2 [Populus euphratica]
13 Hb_005488_010 0.0898029734 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001789_090 0.0899897825 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
15 Hb_000567_260 0.0904099187 - - BnaA09g41440D [Brassica napus]
16 Hb_154648_010 0.0906612946 - - PREDICTED: uncharacterized protein LOC105634412 isoform X2 [Jatropha curcas]
17 Hb_015306_020 0.0907560995 transcription factor TF Family: MYB-related PREDICTED: dnaJ homolog subfamily C member 2 [Jatropha curcas]
18 Hb_015001_020 0.0914355424 - - PREDICTED: la-related protein 6B [Jatropha curcas]
19 Hb_131864_040 0.0918218735 - - PREDICTED: uncharacterized protein LOC105649406 isoform X1 [Jatropha curcas]
20 Hb_003018_190 0.0919190399 - - PREDICTED: pentatricopeptide repeat-containing protein At4g31070, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000200_050 Hb_000200_050 Hb_006816_140 Hb_006816_140 Hb_000200_050--Hb_006816_140 Hb_001158_140 Hb_001158_140 Hb_000200_050--Hb_001158_140 Hb_004976_030 Hb_004976_030 Hb_000200_050--Hb_004976_030 Hb_016065_010 Hb_016065_010 Hb_000200_050--Hb_016065_010 Hb_003996_020 Hb_003996_020 Hb_000200_050--Hb_003996_020 Hb_002835_410 Hb_002835_410 Hb_000200_050--Hb_002835_410 Hb_006816_140--Hb_001158_140 Hb_003266_130 Hb_003266_130 Hb_006816_140--Hb_003266_130 Hb_016901_010 Hb_016901_010 Hb_006816_140--Hb_016901_010 Hb_000997_400 Hb_000997_400 Hb_006816_140--Hb_000997_400 Hb_000614_230 Hb_000614_230 Hb_006816_140--Hb_000614_230 Hb_005488_010 Hb_005488_010 Hb_001158_140--Hb_005488_010 Hb_001158_140--Hb_003266_130 Hb_004993_050 Hb_004993_050 Hb_001158_140--Hb_004993_050 Hb_003018_190 Hb_003018_190 Hb_001158_140--Hb_003018_190 Hb_000207_250 Hb_000207_250 Hb_004976_030--Hb_000207_250 Hb_154648_010 Hb_154648_010 Hb_004976_030--Hb_154648_010 Hb_000000_250 Hb_000000_250 Hb_004976_030--Hb_000000_250 Hb_004976_030--Hb_003996_020 Hb_004109_190 Hb_004109_190 Hb_004976_030--Hb_004109_190 Hb_000205_270 Hb_000205_270 Hb_016065_010--Hb_000205_270 Hb_016065_010--Hb_005488_010 Hb_008453_090 Hb_008453_090 Hb_016065_010--Hb_008453_090 Hb_055062_030 Hb_055062_030 Hb_016065_010--Hb_055062_030 Hb_009486_130 Hb_009486_130 Hb_016065_010--Hb_009486_130 Hb_000009_160 Hb_000009_160 Hb_016065_010--Hb_000009_160 Hb_002759_060 Hb_002759_060 Hb_003996_020--Hb_002759_060 Hb_006922_110 Hb_006922_110 Hb_003996_020--Hb_006922_110 Hb_061090_010 Hb_061090_010 Hb_003996_020--Hb_061090_010 Hb_001242_110 Hb_001242_110 Hb_003996_020--Hb_001242_110 Hb_033834_040 Hb_033834_040 Hb_003996_020--Hb_033834_040 Hb_003996_020--Hb_154648_010 Hb_182026_020 Hb_182026_020 Hb_002835_410--Hb_182026_020 Hb_022216_020 Hb_022216_020 Hb_002835_410--Hb_022216_020 Hb_001248_130 Hb_001248_130 Hb_002835_410--Hb_001248_130 Hb_000029_020 Hb_000029_020 Hb_002835_410--Hb_000029_020 Hb_000418_100 Hb_000418_100 Hb_002835_410--Hb_000418_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.80431 2.58526 0.732837 2.87745 5.7669 7.47301
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.97302 7.9075 9.66146 3.8831 1.80136

CAGE analysis