Hb_000200_060

Information

Type -
Description -
Location Contig200: 70646-72204
Sequence    

Annotation

kegg
ID rcu:RCOM_0577730
description palmitoyl-acyl carrier protein thioesterase (EC:3.1.2.14)
nr
ID KEH44149.1
description palmitoyl-acyl carrier thioesterase [Medicago truncatula]
swissprot
ID Q9SQI3
description Palmitoyl-acyl carrier protein thioesterase, chloroplastic OS=Gossypium hirsutum GN=FATB1 PE=1 SV=1
trembl
ID A0A072VQ47
description Palmitoyl-acyl carrier thioesterase OS=Medicago truncatula GN=MTR_1g109110 PE=4 SV=1
Gene Ontology
ID GO:0016297
description palmitoyl-acyl carrier protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000200_060 0.0 - - palmitoyl-acyl carrier thioesterase [Medicago truncatula]
2 Hb_001741_100 0.1731254461 rubber biosynthesis Gene Name: REF6 unnamed protein product [Vitis vinifera]
3 Hb_002234_220 0.1745772005 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1 [Jatropha curcas]
4 Hb_134732_010 0.1842176026 - - -
5 Hb_002124_020 0.1909377774 transcription factor TF Family: bHLH lMYC3 [Hevea brasiliensis]
6 Hb_002217_130 0.1999991225 - - galactinol synthase-1 [Manihot esculenta]
7 Hb_000007_310 0.2067584303 - - hypothetical protein POPTR_0010s14370g [Populus trichocarpa]
8 Hb_040779_010 0.2128947799 - - -
9 Hb_003494_260 0.2232645916 - - -
10 Hb_001951_120 0.223972109 - - -
11 Hb_000153_040 0.2294029701 - - -
12 Hb_000345_480 0.2301215977 - - cyclin-dependent protein kinase, putative [Ricinus communis]
13 Hb_000153_020 0.2302153397 - - conserved hypothetical protein [Ricinus communis]
14 Hb_132629_010 0.2303844912 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
15 Hb_075570_010 0.2309199052 - - -
16 Hb_001892_160 0.2326092658 - - PREDICTED: MLP-like protein 28-like [Citrus sinensis]
17 Hb_000735_010 0.2326525211 - - -
18 Hb_000028_630 0.2353474445 - - PIN-like protein, partial [Selaginella apoda]
19 Hb_156144_020 0.2356412272 - - PREDICTED: uncharacterized protein At5g65660 [Vitis vinifera]
20 Hb_000176_060 0.236069632 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_000200_060 Hb_000200_060 Hb_001741_100 Hb_001741_100 Hb_000200_060--Hb_001741_100 Hb_002234_220 Hb_002234_220 Hb_000200_060--Hb_002234_220 Hb_134732_010 Hb_134732_010 Hb_000200_060--Hb_134732_010 Hb_002124_020 Hb_002124_020 Hb_000200_060--Hb_002124_020 Hb_002217_130 Hb_002217_130 Hb_000200_060--Hb_002217_130 Hb_000007_310 Hb_000007_310 Hb_000200_060--Hb_000007_310 Hb_001741_100--Hb_002217_130 Hb_001741_100--Hb_002234_220 Hb_001892_160 Hb_001892_160 Hb_001741_100--Hb_001892_160 Hb_156144_020 Hb_156144_020 Hb_001741_100--Hb_156144_020 Hb_001741_100--Hb_000007_310 Hb_002234_220--Hb_002124_020 Hb_002234_220--Hb_002217_130 Hb_000605_010 Hb_000605_010 Hb_002234_220--Hb_000605_010 Hb_073212_010 Hb_073212_010 Hb_002234_220--Hb_073212_010 Hb_000038_150 Hb_000038_150 Hb_134732_010--Hb_000038_150 Hb_005116_020 Hb_005116_020 Hb_134732_010--Hb_005116_020 Hb_001159_210 Hb_001159_210 Hb_134732_010--Hb_001159_210 Hb_003320_030 Hb_003320_030 Hb_134732_010--Hb_003320_030 Hb_134732_010--Hb_156144_020 Hb_002124_020--Hb_001741_100 Hb_000879_050 Hb_000879_050 Hb_002124_020--Hb_000879_050 Hb_002124_020--Hb_000605_010 Hb_000258_020 Hb_000258_020 Hb_002124_020--Hb_000258_020 Hb_002217_130--Hb_001892_160 Hb_000161_100 Hb_000161_100 Hb_002217_130--Hb_000161_100 Hb_002217_130--Hb_000007_310 Hb_132629_010 Hb_132629_010 Hb_000007_310--Hb_132629_010 Hb_075570_010 Hb_075570_010 Hb_000007_310--Hb_075570_010 Hb_177627_010 Hb_177627_010 Hb_000007_310--Hb_177627_010 Hb_003494_260 Hb_003494_260 Hb_000007_310--Hb_003494_260 Hb_000153_020 Hb_000153_020 Hb_000007_310--Hb_000153_020 Hb_000153_040 Hb_000153_040 Hb_000007_310--Hb_000153_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.305694 0.0267548 0.0399216 0.0239411 0.334354 0.218658
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis