Hb_000200_100

Information

Type -
Description -
Location Contig200: 115182-119066
Sequence    

Annotation

kegg
ID pop:POPTR_0013s14810g
description POPTRDRAFT_571849; hypothetical protein
nr
ID XP_002319949.2
description hypothetical protein POPTR_0013s14810g, partial [Populus trichocarpa]
swissprot
ID Q94B46
description F-box/LRR-repeat protein At4g14096 OS=Arabidopsis thaliana GN=At4g14096 PE=2 SV=1
trembl
ID B9I6K2
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0013s14810g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20198: 115534-115644 , PASA_asmbl_20199: 115738-118963
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000200_100 0.0 - - hypothetical protein POPTR_0013s14810g, partial [Populus trichocarpa]
2 Hb_008173_090 0.0527919055 - - glutathione peroxidase, putative [Ricinus communis]
3 Hb_002301_140 0.0670880715 - - PREDICTED: uncharacterized protein At4g28440 [Jatropha curcas]
4 Hb_001235_190 0.0709226119 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
5 Hb_001257_080 0.0758138478 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000970_010 0.0758192442 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
7 Hb_002182_060 0.0761695776 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATXR6 [Jatropha curcas]
8 Hb_002030_040 0.0762344909 - - hypothetical protein JCGZ_18677 [Jatropha curcas]
9 Hb_001008_060 0.0765268128 - - PREDICTED: monothiol glutaredoxin-S15, mitochondrial [Jatropha curcas]
10 Hb_000574_480 0.0791899173 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
11 Hb_002963_010 0.0795081434 - - PREDICTED: autophagy-related protein 18b-like isoform X1 [Jatropha curcas]
12 Hb_007101_150 0.0797461198 - - hypothetical protein CICLE_v10033984mg [Citrus clementina]
13 Hb_003656_070 0.0843669031 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
14 Hb_000007_100 0.0845000109 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
15 Hb_000085_320 0.0859005818 - - Uncharacterized protein TCM_030749 [Theobroma cacao]
16 Hb_007479_020 0.086482979 - - PREDICTED: CMP-sialic acid transporter 5 [Jatropha curcas]
17 Hb_003018_200 0.0880384472 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
18 Hb_004837_140 0.0886298159 - - hypothetical protein PRUPE_ppa012469mg [Prunus persica]
19 Hb_001138_050 0.0889789411 - - hypothetical protein JCGZ_15696 [Jatropha curcas]
20 Hb_001159_140 0.0894771552 - - hypothetical protein POPTR_0001s08090g [Populus trichocarpa]

Gene co-expression network

sample Hb_000200_100 Hb_000200_100 Hb_008173_090 Hb_008173_090 Hb_000200_100--Hb_008173_090 Hb_002301_140 Hb_002301_140 Hb_000200_100--Hb_002301_140 Hb_001235_190 Hb_001235_190 Hb_000200_100--Hb_001235_190 Hb_001257_080 Hb_001257_080 Hb_000200_100--Hb_001257_080 Hb_000970_010 Hb_000970_010 Hb_000200_100--Hb_000970_010 Hb_002182_060 Hb_002182_060 Hb_000200_100--Hb_002182_060 Hb_008173_090--Hb_001235_190 Hb_003656_070 Hb_003656_070 Hb_008173_090--Hb_003656_070 Hb_000574_480 Hb_000574_480 Hb_008173_090--Hb_000574_480 Hb_008173_090--Hb_000970_010 Hb_008173_090--Hb_002182_060 Hb_028995_040 Hb_028995_040 Hb_002301_140--Hb_028995_040 Hb_023226_040 Hb_023226_040 Hb_002301_140--Hb_023226_040 Hb_002007_060 Hb_002007_060 Hb_002301_140--Hb_002007_060 Hb_009773_020 Hb_009773_020 Hb_002301_140--Hb_009773_020 Hb_002301_140--Hb_001235_190 Hb_001722_100 Hb_001722_100 Hb_001235_190--Hb_001722_100 Hb_002963_010 Hb_002963_010 Hb_001235_190--Hb_002963_010 Hb_004204_120 Hb_004204_120 Hb_001235_190--Hb_004204_120 Hb_000307_090 Hb_000307_090 Hb_001235_190--Hb_000307_090 Hb_002110_120 Hb_002110_120 Hb_001235_190--Hb_002110_120 Hb_002205_080 Hb_002205_080 Hb_001257_080--Hb_002205_080 Hb_007741_050 Hb_007741_050 Hb_001257_080--Hb_007741_050 Hb_007101_150 Hb_007101_150 Hb_001257_080--Hb_007101_150 Hb_002529_100 Hb_002529_100 Hb_001257_080--Hb_002529_100 Hb_022250_040 Hb_022250_040 Hb_001257_080--Hb_022250_040 Hb_000798_030 Hb_000798_030 Hb_001257_080--Hb_000798_030 Hb_001818_020 Hb_001818_020 Hb_000970_010--Hb_001818_020 Hb_023732_070 Hb_023732_070 Hb_000970_010--Hb_023732_070 Hb_002518_050 Hb_002518_050 Hb_000970_010--Hb_002518_050 Hb_001584_070 Hb_001584_070 Hb_000970_010--Hb_001584_070 Hb_000545_150 Hb_000545_150 Hb_000970_010--Hb_000545_150 Hb_000099_060 Hb_000099_060 Hb_002182_060--Hb_000099_060 Hb_002182_060--Hb_000970_010 Hb_003106_050 Hb_003106_050 Hb_002182_060--Hb_003106_050 Hb_002182_060--Hb_002301_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.3417 13.9518 7.81414 15.3977 27.625 22.2634
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.0288 55.2804 31.1327 12.436 7.05735

CAGE analysis