Hb_000200_140

Information

Type -
Description -
Location Contig200: 181223-190099
Sequence    

Annotation

kegg
ID pxb:103949464
description uncharacterized LOC103949464
nr
ID XP_010249461.1
description PREDICTED: uncharacterized protein LOC104591989 [Nelumbo nucifera]
swissprot
ID -
description -
trembl
ID W9R2F7
description Uncharacterized protein OS=Morus notabilis GN=L484_025842 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000200_140 0.0 - - PREDICTED: uncharacterized protein LOC104591989 [Nelumbo nucifera]
2 Hb_000532_020 0.0746327333 - - beta-tubulin [Bouteloua eriopoda]
3 Hb_002890_030 0.1083030776 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
4 Hb_004204_080 0.1229604785 - - diacylglycerol kinase, theta, putative [Ricinus communis]
5 Hb_002341_030 0.1248351261 - - PREDICTED: transcription factor bHLH140 [Jatropha curcas]
6 Hb_005839_120 0.1251386553 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
7 Hb_008643_060 0.1259423828 - - unnamed protein product [Coffea canephora]
8 Hb_001616_050 0.1272408401 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
9 Hb_000291_190 0.1289913659 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA3 [Jatropha curcas]
10 Hb_001584_170 0.1291727298 - - neutral/alkaline invertase [Manihot esculenta]
11 Hb_000009_210 0.130271722 - - PREDICTED: pentatricopeptide repeat-containing protein At2g01390 [Jatropha curcas]
12 Hb_063100_010 0.1312440057 - - TATA box-binding protein-associated factor [Populus trichocarpa]
13 Hb_000173_400 0.1325151749 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18950 [Jatropha curcas]
14 Hb_000031_050 0.1329330928 - - PREDICTED: uncharacterized protein LOC105637478 [Jatropha curcas]
15 Hb_002601_120 0.1337088681 - - PREDICTED: uncharacterized protein LOC105634921 [Jatropha curcas]
16 Hb_000953_010 0.1343954412 - - hypothetical protein CISIN_1g0425012mg, partial [Citrus sinensis]
17 Hb_000906_060 0.1382744368 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g08820 [Populus euphratica]
18 Hb_000465_480 0.1390914099 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16835, mitochondrial [Jatropha curcas]
19 Hb_000861_070 0.139284216 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000270_780 0.1400666652 - - PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9 [Jatropha curcas]

Gene co-expression network

sample Hb_000200_140 Hb_000200_140 Hb_000532_020 Hb_000532_020 Hb_000200_140--Hb_000532_020 Hb_002890_030 Hb_002890_030 Hb_000200_140--Hb_002890_030 Hb_004204_080 Hb_004204_080 Hb_000200_140--Hb_004204_080 Hb_002341_030 Hb_002341_030 Hb_000200_140--Hb_002341_030 Hb_005839_120 Hb_005839_120 Hb_000200_140--Hb_005839_120 Hb_008643_060 Hb_008643_060 Hb_000200_140--Hb_008643_060 Hb_140171_010 Hb_140171_010 Hb_000532_020--Hb_140171_010 Hb_000532_020--Hb_004204_080 Hb_000532_020--Hb_008643_060 Hb_001083_030 Hb_001083_030 Hb_000532_020--Hb_001083_030 Hb_000532_020--Hb_002890_030 Hb_000861_070 Hb_000861_070 Hb_002890_030--Hb_000861_070 Hb_012654_010 Hb_012654_010 Hb_002890_030--Hb_012654_010 Hb_002890_030--Hb_004204_080 Hb_003097_190 Hb_003097_190 Hb_002890_030--Hb_003097_190 Hb_001057_010 Hb_001057_010 Hb_002890_030--Hb_001057_010 Hb_002890_030--Hb_008643_060 Hb_001797_050 Hb_001797_050 Hb_004204_080--Hb_001797_050 Hb_005730_030 Hb_005730_030 Hb_004204_080--Hb_005730_030 Hb_005532_050 Hb_005532_050 Hb_004204_080--Hb_005532_050 Hb_000031_050 Hb_000031_050 Hb_004204_080--Hb_000031_050 Hb_022408_010 Hb_022408_010 Hb_004204_080--Hb_022408_010 Hb_001541_020 Hb_001541_020 Hb_004204_080--Hb_001541_020 Hb_012016_020 Hb_012016_020 Hb_002341_030--Hb_012016_020 Hb_002725_070 Hb_002725_070 Hb_002341_030--Hb_002725_070 Hb_005635_010 Hb_005635_010 Hb_002341_030--Hb_005635_010 Hb_002928_060 Hb_002928_060 Hb_002341_030--Hb_002928_060 Hb_001504_160 Hb_001504_160 Hb_002341_030--Hb_001504_160 Hb_110364_010 Hb_110364_010 Hb_002341_030--Hb_110364_010 Hb_000953_010 Hb_000953_010 Hb_005839_120--Hb_000953_010 Hb_000173_400 Hb_000173_400 Hb_005839_120--Hb_000173_400 Hb_010710_010 Hb_010710_010 Hb_005839_120--Hb_010710_010 Hb_000358_080 Hb_000358_080 Hb_005839_120--Hb_000358_080 Hb_002810_020 Hb_002810_020 Hb_005839_120--Hb_002810_020 Hb_000490_030 Hb_000490_030 Hb_005839_120--Hb_000490_030 Hb_008643_060--Hb_004204_080 Hb_002601_120 Hb_002601_120 Hb_008643_060--Hb_002601_120 Hb_000270_780 Hb_000270_780 Hb_008643_060--Hb_000270_780 Hb_001575_080 Hb_001575_080 Hb_008643_060--Hb_001575_080 Hb_008643_060--Hb_000861_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.458487 0.670271 0.278834 0.0850654 0.825726 0.869401
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.273671 0.29368 0.619356 0.2289 0.0628137

CAGE analysis