Hb_000200_170

Information

Type -
Description -
Location Contig200: 212825-213334
Sequence    

Annotation

kegg
ID pop:POPTR_0008s12460g
description POPTRDRAFT_803581; RING-H2 zinc finger protein RHA2a
nr
ID XP_011022729.1
description PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Populus euphratica]
swissprot
ID Q9ZT50
description E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana GN=RHA2A PE=1 SV=1
trembl
ID A0A067KFU7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09295 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase rha2a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20211: 212757-213622
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000200_170 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Populus euphratica]
2 Hb_002849_070 0.0444004805 - - PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]
3 Hb_000056_080 0.0851062725 - - PREDICTED: protein kinase 2B, chloroplastic [Jatropha curcas]
4 Hb_004724_330 0.0975796855 - - Capsanthin/capsorubin synthase, chloroplast precursor, putative [Ricinus communis]
5 Hb_000203_270 0.100693488 - - alpha-xylosidase, putative [Ricinus communis]
6 Hb_143766_030 0.1089589334 - - protein with unknown function [Ricinus communis]
7 Hb_001818_060 0.1096846992 - - PREDICTED: cysteine proteinase inhibitor 5-like [Jatropha curcas]
8 Hb_000069_780 0.1143315518 - - atpob1, putative [Ricinus communis]
9 Hb_000735_140 0.1162968466 - - 3-glucanase family protein [Populus trichocarpa]
10 Hb_001133_010 0.117866392 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000836_600 0.1189532435 - - PREDICTED: delta(8)-fatty-acid desaturase 2 [Jatropha curcas]
12 Hb_017159_010 0.1201662589 - - -
13 Hb_033363_010 0.1224205787 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
14 Hb_000950_040 0.1226835406 - - cation-transporting atpase plant, putative [Ricinus communis]
15 Hb_001369_780 0.1257238627 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005714_100 0.127124892 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]
17 Hb_001675_320 0.1311759223 - - PREDICTED: uncharacterized protein LOC105635025 [Jatropha curcas]
18 Hb_000523_030 0.1314276617 - - PREDICTED: uncharacterized protein LOC105643073 [Jatropha curcas]
19 Hb_003090_160 0.1321925012 - - -
20 Hb_001754_060 0.1322668542 - - Xyloglucan 6-xylosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000200_170 Hb_000200_170 Hb_002849_070 Hb_002849_070 Hb_000200_170--Hb_002849_070 Hb_000056_080 Hb_000056_080 Hb_000200_170--Hb_000056_080 Hb_004724_330 Hb_004724_330 Hb_000200_170--Hb_004724_330 Hb_000203_270 Hb_000203_270 Hb_000200_170--Hb_000203_270 Hb_143766_030 Hb_143766_030 Hb_000200_170--Hb_143766_030 Hb_001818_060 Hb_001818_060 Hb_000200_170--Hb_001818_060 Hb_002849_070--Hb_000056_080 Hb_002849_070--Hb_000203_270 Hb_000735_140 Hb_000735_140 Hb_002849_070--Hb_000735_140 Hb_033363_010 Hb_033363_010 Hb_002849_070--Hb_033363_010 Hb_002849_070--Hb_001818_060 Hb_000056_080--Hb_000203_270 Hb_003670_030 Hb_003670_030 Hb_000056_080--Hb_003670_030 Hb_000056_080--Hb_000735_140 Hb_003849_190 Hb_003849_190 Hb_000056_080--Hb_003849_190 Hb_004724_330--Hb_002849_070 Hb_004724_330--Hb_143766_030 Hb_000056_280 Hb_000056_280 Hb_004724_330--Hb_000056_280 Hb_004724_330--Hb_000056_080 Hb_004724_330--Hb_000735_140 Hb_004987_020 Hb_004987_020 Hb_000203_270--Hb_004987_020 Hb_002739_120 Hb_002739_120 Hb_000203_270--Hb_002739_120 Hb_001135_030 Hb_001135_030 Hb_000203_270--Hb_001135_030 Hb_003599_030 Hb_003599_030 Hb_000203_270--Hb_003599_030 Hb_002248_120 Hb_002248_120 Hb_143766_030--Hb_002248_120 Hb_003605_220 Hb_003605_220 Hb_143766_030--Hb_003605_220 Hb_143766_030--Hb_000735_140 Hb_023344_110 Hb_023344_110 Hb_143766_030--Hb_023344_110 Hb_000069_780 Hb_000069_780 Hb_143766_030--Hb_000069_780 Hb_000465_260 Hb_000465_260 Hb_001818_060--Hb_000465_260 Hb_004631_110 Hb_004631_110 Hb_001818_060--Hb_004631_110 Hb_001195_350 Hb_001195_350 Hb_001818_060--Hb_001195_350 Hb_000676_040 Hb_000676_040 Hb_001818_060--Hb_000676_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.22044 54.2901 25.0189 50.1317 6.12241 9.67286
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.23729 6.73789 5.38292 16.5218 19.7432

CAGE analysis