Hb_000200_190

Information

Type transcription factor
Description TF Family: C3H
Location Contig200: 234935-237689
Sequence    

Annotation

kegg
ID rcu:RCOM_0577410
description zinc finger protein, putative
nr
ID XP_012075708.1
description PREDICTED: zinc finger CCCH domain-containing protein 15 [Jatropha curcas]
swissprot
ID Q9C9F5
description Zinc finger CCCH domain-containing protein 15 OS=Arabidopsis thaliana GN=At1g68200 PE=2 SV=1
trembl
ID A0A067KRU6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09298 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger ccch domain-containing protein 15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000200_190 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 15 [Jatropha curcas]
2 Hb_000313_320 0.2707206142 - - PREDICTED: protein kinase PINOID [Jatropha curcas]
3 Hb_087221_010 0.2936839182 - - hypothetical protein CISIN_1g033698mg [Citrus sinensis]
4 Hb_184770_010 0.2979357899 - - -
5 Hb_010770_010 0.3044288097 - - -
6 Hb_000815_100 0.3050384789 - - -
7 Hb_013124_010 0.3058024117 - - PREDICTED: (+)-neomenthol dehydrogenase-like isoform X1 [Jatropha curcas]
8 Hb_021409_130 0.3095622361 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like isoform 1 [Glycine max]
9 Hb_000186_100 0.318588469 - - PREDICTED: uncharacterized protein LOC105649284 isoform X1 [Jatropha curcas]
10 Hb_176844_010 0.3253681582 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
11 Hb_007805_020 0.3276121954 - - -
12 Hb_000155_060 0.3293617737 - - ATP binding protein, putative [Ricinus communis]
13 Hb_000905_070 0.3308564515 - - PREDICTED: uncharacterized protein LOC104223093 [Nicotiana sylvestris]
14 Hb_012384_050 0.3312071237 - - PREDICTED: uncharacterized protein LOC105641396 [Jatropha curcas]
15 Hb_019936_010 0.3363308425 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 10 [Jatropha curcas]
16 Hb_095471_010 0.3385276937 - - PREDICTED: putative sodium-coupled neutral amino acid transporter 7 [Jatropha curcas]
17 Hb_000028_630 0.338814559 - - PIN-like protein, partial [Selaginella apoda]
18 Hb_001248_040 0.340967098 - - -
19 Hb_001902_020 0.3413515538 - - -
20 Hb_000101_180 0.3418039133 - - -

Gene co-expression network

sample Hb_000200_190 Hb_000200_190 Hb_000313_320 Hb_000313_320 Hb_000200_190--Hb_000313_320 Hb_087221_010 Hb_087221_010 Hb_000200_190--Hb_087221_010 Hb_184770_010 Hb_184770_010 Hb_000200_190--Hb_184770_010 Hb_010770_010 Hb_010770_010 Hb_000200_190--Hb_010770_010 Hb_000815_100 Hb_000815_100 Hb_000200_190--Hb_000815_100 Hb_013124_010 Hb_013124_010 Hb_000200_190--Hb_013124_010 Hb_095471_010 Hb_095471_010 Hb_000313_320--Hb_095471_010 Hb_000186_100 Hb_000186_100 Hb_000313_320--Hb_000186_100 Hb_000101_180 Hb_000101_180 Hb_000313_320--Hb_000101_180 Hb_000258_150 Hb_000258_150 Hb_000313_320--Hb_000258_150 Hb_123104_010 Hb_123104_010 Hb_000313_320--Hb_123104_010 Hb_002388_060 Hb_002388_060 Hb_000313_320--Hb_002388_060 Hb_012384_050 Hb_012384_050 Hb_087221_010--Hb_012384_050 Hb_087221_010--Hb_010770_010 Hb_176844_010 Hb_176844_010 Hb_087221_010--Hb_176844_010 Hb_073212_010 Hb_073212_010 Hb_087221_010--Hb_073212_010 Hb_020549_010 Hb_020549_010 Hb_087221_010--Hb_020549_010 Hb_000733_040 Hb_000733_040 Hb_087221_010--Hb_000733_040 Hb_184770_010--Hb_013124_010 Hb_001001_020 Hb_001001_020 Hb_184770_010--Hb_001001_020 Hb_005695_060 Hb_005695_060 Hb_184770_010--Hb_005695_060 Hb_022132_010 Hb_022132_010 Hb_184770_010--Hb_022132_010 Hb_019936_010 Hb_019936_010 Hb_184770_010--Hb_019936_010 Hb_184770_010--Hb_000815_100 Hb_010770_010--Hb_176844_010 Hb_010770_010--Hb_012384_050 Hb_010770_010--Hb_073212_010 Hb_007382_040 Hb_007382_040 Hb_010770_010--Hb_007382_040 Hb_000046_410 Hb_000046_410 Hb_010770_010--Hb_000046_410 Hb_002192_070 Hb_002192_070 Hb_000815_100--Hb_002192_070 Hb_000849_150 Hb_000849_150 Hb_000815_100--Hb_000849_150 Hb_007765_060 Hb_007765_060 Hb_000815_100--Hb_007765_060 Hb_030414_050 Hb_030414_050 Hb_000815_100--Hb_030414_050 Hb_000815_100--Hb_095471_010 Hb_000544_040 Hb_000544_040 Hb_000815_100--Hb_000544_040 Hb_002783_020 Hb_002783_020 Hb_013124_010--Hb_002783_020 Hb_005527_080 Hb_005527_080 Hb_013124_010--Hb_005527_080 Hb_005535_060 Hb_005535_060 Hb_013124_010--Hb_005535_060 Hb_013124_010--Hb_002192_070 Hb_013124_010--Hb_012384_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.85639 0.094794 0.755337 0.106134 1.73947 0.216767
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.274249 0.107874 0.303025 0.0107774 0.843301

CAGE analysis