Hb_000200_210

Information

Type -
Description -
Location Contig200: 255540-260114
Sequence    

Annotation

kegg
ID rcu:RCOM_0577370
description hypothetical protein
nr
ID XP_002526295.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID P55852
description Small ubiquitin-related modifier 1 OS=Arabidopsis thaliana GN=SUMO1 PE=1 SV=2
trembl
ID B9SJX6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0577370 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20217: 255538-260230
cDNA
(Sanger)
(ID:Location)		 046_A01.ab1: 255853-260137

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000200_210 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000500_130 0.061903418 - - small GTPase [Hevea brasiliensis]
3 Hb_004297_100 0.0765524569 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
4 Hb_006447_010 0.0782844707 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
5 Hb_001019_090 0.079179227 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
6 Hb_125000_010 0.0805755731 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
7 Hb_003874_020 0.0821405765 - - hypothetical protein POPTR_0012s02280g [Populus trichocarpa]
8 Hb_004724_100 0.0841748978 - - 60S ribosomal protein L10aA [Hevea brasiliensis]
9 Hb_000977_130 0.0842895632 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Populus euphratica]
10 Hb_022250_040 0.0848649372 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
11 Hb_005611_010 0.0861910454 - - PREDICTED: protein prune homolog [Jatropha curcas]
12 Hb_000316_110 0.0865199714 - - Dolichyl-phosphate beta-glucosyltransferase, putative [Ricinus communis]
13 Hb_011161_040 0.0890352549 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]
14 Hb_007166_050 0.0893491965 - - -
15 Hb_118419_020 0.0895208379 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Vitis vinifera]
16 Hb_159558_030 0.0896123762 - - ubiquitin-conjugating enzyme E2 variant 1D [Jatropha curcas]
17 Hb_005686_110 0.0898286729 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
18 Hb_001754_150 0.0901227599 - - PREDICTED: vesicle-associated membrane protein 724 [Jatropha curcas]
19 Hb_009767_120 0.0906802104 - - PREDICTED: probable prefoldin subunit 2 [Jatropha curcas]
20 Hb_000690_080 0.0912134887 transcription factor TF Family: HB -

Gene co-expression network

sample Hb_000200_210 Hb_000200_210 Hb_000500_130 Hb_000500_130 Hb_000200_210--Hb_000500_130 Hb_004297_100 Hb_004297_100 Hb_000200_210--Hb_004297_100 Hb_006447_010 Hb_006447_010 Hb_000200_210--Hb_006447_010 Hb_001019_090 Hb_001019_090 Hb_000200_210--Hb_001019_090 Hb_125000_010 Hb_125000_010 Hb_000200_210--Hb_125000_010 Hb_003874_020 Hb_003874_020 Hb_000200_210--Hb_003874_020 Hb_159558_030 Hb_159558_030 Hb_000500_130--Hb_159558_030 Hb_002400_220 Hb_002400_220 Hb_000500_130--Hb_002400_220 Hb_004324_310 Hb_004324_310 Hb_000500_130--Hb_004324_310 Hb_000500_130--Hb_125000_010 Hb_022250_040 Hb_022250_040 Hb_000500_130--Hb_022250_040 Hb_000483_160 Hb_000483_160 Hb_004297_100--Hb_000483_160 Hb_004297_100--Hb_001019_090 Hb_005611_010 Hb_005611_010 Hb_004297_100--Hb_005611_010 Hb_000617_320 Hb_000617_320 Hb_004297_100--Hb_000617_320 Hb_023732_070 Hb_023732_070 Hb_004297_100--Hb_023732_070 Hb_001246_100 Hb_001246_100 Hb_006447_010--Hb_001246_100 Hb_001243_050 Hb_001243_050 Hb_006447_010--Hb_001243_050 Hb_000442_160 Hb_000442_160 Hb_006447_010--Hb_000442_160 Hb_001030_120 Hb_001030_120 Hb_006447_010--Hb_001030_120 Hb_133271_020 Hb_133271_020 Hb_006447_010--Hb_133271_020 Hb_012340_030 Hb_012340_030 Hb_006447_010--Hb_012340_030 Hb_007166_050 Hb_007166_050 Hb_001019_090--Hb_007166_050 Hb_001019_090--Hb_000617_320 Hb_000152_430 Hb_000152_430 Hb_001019_090--Hb_000152_430 Hb_001754_150 Hb_001754_150 Hb_001019_090--Hb_001754_150 Hb_001019_090--Hb_000483_160 Hb_010436_070 Hb_010436_070 Hb_125000_010--Hb_010436_070 Hb_009711_030 Hb_009711_030 Hb_125000_010--Hb_009711_030 Hb_003540_040 Hb_003540_040 Hb_125000_010--Hb_003540_040 Hb_118419_020 Hb_118419_020 Hb_125000_010--Hb_118419_020 Hb_002411_170 Hb_002411_170 Hb_125000_010--Hb_002411_170 Hb_125000_010--Hb_022250_040 Hb_009767_120 Hb_009767_120 Hb_003874_020--Hb_009767_120 Hb_004724_100 Hb_004724_100 Hb_003874_020--Hb_004724_100 Hb_001279_070 Hb_001279_070 Hb_003874_020--Hb_001279_070 Hb_004944_010 Hb_004944_010 Hb_003874_020--Hb_004944_010 Hb_004440_050 Hb_004440_050 Hb_003874_020--Hb_004440_050 Hb_000690_080 Hb_000690_080 Hb_003874_020--Hb_000690_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.8123 8.73316 11.9572 14.3824 27.5452 52.1815
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
47.2361 48.4039 28.8947 8.06499 4.21929

CAGE analysis