Hb_000200_280

Information

Type -
Description -
Location Contig200: 328891-331772
Sequence    

Annotation

kegg
ID rcu:RCOM_0576890
description ATP binding protein, putative
nr
ID XP_012075721.1
description PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KRV4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09308 PE=4 SV=1
Gene Ontology
ID GO:0044424
description atp binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20222: 329025-329247 , PASA_asmbl_20223: 329326-331772
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000200_280 0.0 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
2 Hb_000976_040 0.0829968564 - - molybdopterin cofactor sulfurase, putative [Ricinus communis]
3 Hb_002827_020 0.0863068847 - - PREDICTED: plant intracellular Ras-group-related LRR protein 5-like [Jatropha curcas]
4 Hb_089140_030 0.0966815785 - - PREDICTED: thiol protease aleurain-like [Jatropha curcas]
5 Hb_011716_090 0.1005865143 transcription factor TF Family: HRT putative transciption factor family protein [Populus trichocarpa]
6 Hb_011512_090 0.1014353546 - - Hydroxyethylthiazole kinase, putative [Ricinus communis]
7 Hb_002110_030 0.1051934352 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
8 Hb_005214_090 0.105838277 - - PREDICTED: uncharacterized protein LOC105636015 [Jatropha curcas]
9 Hb_001514_130 0.1077155953 - - hypothetical protein JCGZ_16073 [Jatropha curcas]
10 Hb_000640_130 0.1083670258 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
11 Hb_002007_240 0.1118004721 - - PREDICTED: F-box protein At1g55000 [Jatropha curcas]
12 Hb_001416_020 0.1130030851 - - H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis]
13 Hb_000227_060 0.1132840703 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
14 Hb_001269_690 0.1139264269 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002400_400 0.1183949828 - - PREDICTED: topless-related protein 1-like isoform X3 [Jatropha curcas]
16 Hb_156850_070 0.1214990621 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000390_100 0.1215180117 - - alpha-hydroxynitrile lyase family protein [Populus trichocarpa]
18 Hb_001575_010 0.1225216137 - - PREDICTED: pumilio homolog 6, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_012799_120 0.1236476879 - - PREDICTED: DNA mismatch repair protein MSH3 isoform X1 [Jatropha curcas]
20 Hb_001427_070 0.1241518126 - - PREDICTED: xaa-Pro dipeptidase [Jatropha curcas]

Gene co-expression network

sample Hb_000200_280 Hb_000200_280 Hb_000976_040 Hb_000976_040 Hb_000200_280--Hb_000976_040 Hb_002827_020 Hb_002827_020 Hb_000200_280--Hb_002827_020 Hb_089140_030 Hb_089140_030 Hb_000200_280--Hb_089140_030 Hb_011716_090 Hb_011716_090 Hb_000200_280--Hb_011716_090 Hb_011512_090 Hb_011512_090 Hb_000200_280--Hb_011512_090 Hb_002110_030 Hb_002110_030 Hb_000200_280--Hb_002110_030 Hb_000853_120 Hb_000853_120 Hb_000976_040--Hb_000853_120 Hb_000976_040--Hb_011512_090 Hb_156850_070 Hb_156850_070 Hb_000976_040--Hb_156850_070 Hb_000640_130 Hb_000640_130 Hb_000976_040--Hb_000640_130 Hb_005143_030 Hb_005143_030 Hb_000976_040--Hb_005143_030 Hb_002827_020--Hb_011716_090 Hb_002827_020--Hb_000640_130 Hb_006586_030 Hb_006586_030 Hb_002827_020--Hb_006586_030 Hb_001416_020 Hb_001416_020 Hb_002827_020--Hb_001416_020 Hb_000283_150 Hb_000283_150 Hb_002827_020--Hb_000283_150 Hb_089140_030--Hb_011716_090 Hb_000740_110 Hb_000740_110 Hb_089140_030--Hb_000740_110 Hb_005214_090 Hb_005214_090 Hb_089140_030--Hb_005214_090 Hb_001575_010 Hb_001575_010 Hb_089140_030--Hb_001575_010 Hb_000627_180 Hb_000627_180 Hb_089140_030--Hb_000627_180 Hb_002693_060 Hb_002693_060 Hb_011716_090--Hb_002693_060 Hb_011716_090--Hb_000640_130 Hb_003211_010 Hb_003211_010 Hb_011716_090--Hb_003211_010 Hb_011512_090--Hb_002110_030 Hb_002400_400 Hb_002400_400 Hb_011512_090--Hb_002400_400 Hb_002005_090 Hb_002005_090 Hb_011512_090--Hb_002005_090 Hb_001621_130 Hb_001621_130 Hb_011512_090--Hb_001621_130 Hb_006831_040 Hb_006831_040 Hb_002110_030--Hb_006831_040 Hb_001019_180 Hb_001019_180 Hb_002110_030--Hb_001019_180 Hb_073562_010 Hb_073562_010 Hb_002110_030--Hb_073562_010 Hb_000330_040 Hb_000330_040 Hb_002110_030--Hb_000330_040 Hb_002110_030--Hb_001575_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
83.911 182.102 15.5541 51.4195 119.106 98.614
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
74.3004 50.1294 53.2984 196.088 30.2681

CAGE analysis