Hb_000200_300

Information

Type -
Description -
Location Contig200: 343260-348512
Sequence    

Annotation

kegg
ID rcu:RCOM_0576870
description catalytic, putative
nr
ID XP_012075724.1
description PREDICTED: uncharacterized protein LOC105636926 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KFW0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09310 PE=4 SV=1
Gene Ontology
ID GO:0009507
description PREDICTED: uncharacterized protein LOC105636926

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20228: 343512-348510
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000200_300 0.0 - - PREDICTED: uncharacterized protein LOC105636926 [Jatropha curcas]
2 Hb_000926_080 0.063141156 - - PREDICTED: paraspeckle component 1 [Jatropha curcas]
3 Hb_000057_110 0.0791477545 - - PREDICTED: kinesin-13A [Jatropha curcas]
4 Hb_003266_030 0.0795578988 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
5 Hb_004965_110 0.0827390536 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
6 Hb_000684_030 0.0848688452 - - syntaxin, putative [Ricinus communis]
7 Hb_000086_080 0.0894998419 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001882_010 0.0912034203 - - -
9 Hb_000364_170 0.0914438933 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase CLF [Jatropha curcas]
10 Hb_003119_060 0.0920799871 - - PREDICTED: dicarboxylate transporter 2.1, chloroplastic [Jatropha curcas]
11 Hb_027506_040 0.0942055695 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
12 Hb_007904_230 0.0965797815 - - PREDICTED: D-cysteine desulfhydrase 2, mitochondrial [Jatropha curcas]
13 Hb_156850_100 0.0980514533 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
14 Hb_001221_030 0.0981868588 - - PREDICTED: adenylate kinase 4 [Jatropha curcas]
15 Hb_000181_350 0.0987277623 - - PREDICTED: uncharacterized protein LOC105111090 [Populus euphratica]
16 Hb_049575_010 0.0995352129 - - hypothetical protein POPTR_0001s15330g [Populus trichocarpa]
17 Hb_011671_260 0.1006876088 - - PREDICTED: putative lipase ROG1 isoform X1 [Jatropha curcas]
18 Hb_000330_090 0.1007728827 - - ornithine carbamoyltransferase, putative [Ricinus communis]
19 Hb_007741_110 0.1028845508 - - -
20 Hb_002687_120 0.1037172448 - - PREDICTED: lipoyl synthase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000200_300 Hb_000200_300 Hb_000926_080 Hb_000926_080 Hb_000200_300--Hb_000926_080 Hb_000057_110 Hb_000057_110 Hb_000200_300--Hb_000057_110 Hb_003266_030 Hb_003266_030 Hb_000200_300--Hb_003266_030 Hb_004965_110 Hb_004965_110 Hb_000200_300--Hb_004965_110 Hb_000684_030 Hb_000684_030 Hb_000200_300--Hb_000684_030 Hb_000086_080 Hb_000086_080 Hb_000200_300--Hb_000086_080 Hb_000926_080--Hb_003266_030 Hb_000926_080--Hb_000086_080 Hb_000926_080--Hb_004965_110 Hb_006907_060 Hb_006907_060 Hb_000926_080--Hb_006907_060 Hb_027506_040 Hb_027506_040 Hb_000926_080--Hb_027506_040 Hb_000057_110--Hb_000684_030 Hb_000364_170 Hb_000364_170 Hb_000057_110--Hb_000364_170 Hb_000012_080 Hb_000012_080 Hb_000057_110--Hb_000012_080 Hb_006829_060 Hb_006829_060 Hb_000057_110--Hb_006829_060 Hb_008725_270 Hb_008725_270 Hb_000057_110--Hb_008725_270 Hb_007904_230 Hb_007904_230 Hb_003266_030--Hb_007904_230 Hb_011671_260 Hb_011671_260 Hb_003266_030--Hb_011671_260 Hb_003266_030--Hb_004965_110 Hb_003266_030--Hb_000086_080 Hb_003411_090 Hb_003411_090 Hb_003266_030--Hb_003411_090 Hb_004965_110--Hb_007904_230 Hb_004965_110--Hb_011671_260 Hb_006132_090 Hb_006132_090 Hb_004965_110--Hb_006132_090 Hb_001900_140 Hb_001900_140 Hb_004965_110--Hb_001900_140 Hb_001221_030 Hb_001221_030 Hb_000684_030--Hb_001221_030 Hb_000174_260 Hb_000174_260 Hb_000684_030--Hb_000174_260 Hb_000684_030--Hb_003266_030 Hb_003605_020 Hb_003605_020 Hb_000684_030--Hb_003605_020 Hb_007192_030 Hb_007192_030 Hb_000086_080--Hb_007192_030 Hb_073973_090 Hb_073973_090 Hb_000086_080--Hb_073973_090 Hb_000086_080--Hb_011671_260 Hb_000023_360 Hb_000023_360 Hb_000086_080--Hb_000023_360 Hb_003053_110 Hb_003053_110 Hb_000086_080--Hb_003053_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.67402 1.93621 10.4656 8.07928 1.88062 2.76589
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.81555 5.64489 3.55195 3.7383 7.17914

CAGE analysis