Hb_000200_320

Information

Type transcription factor
Description TF Family: AUX/IAA
Location Contig200: 355259-356934
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa023002mg
description hypothetical protein
nr
ID KDP35023.1
description hypothetical protein JCGZ_09311 [Jatropha curcas]
swissprot
ID Q8RYC6
description Auxin-responsive protein IAA32 OS=Arabidopsis thaliana GN=IAA32 PE=2 SV=2
trembl
ID A0A067KJ18
description Auxin-responsive protein OS=Jatropha curcas GN=JCGZ_09311 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin-responsive protein iaa32

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000200_320 0.0 transcription factor TF Family: AUX/IAA hypothetical protein JCGZ_09311 [Jatropha curcas]
2 Hb_037964_010 0.2779302201 - - hypothetical protein MIMGU_mgv1a000906mg [Erythranthe guttata]
3 Hb_000028_120 0.3032376929 - - Os03g0221800 [Oryza sativa Japonica Group]
4 Hb_000803_040 0.3105375836 - - -
5 Hb_004931_010 0.3197405974 - - inosine triphosphate pyrophosphatase, putative [Ricinus communis]
6 Hb_000749_080 0.3236873538 - - Alpha-expansin 12 precursor, putative [Ricinus communis]
7 Hb_000094_260 0.3242114989 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001504_050 0.3299342006 - - hypothetical protein POPTR_0001s14840g [Populus trichocarpa]
9 Hb_007416_040 0.3326230954 - - glutamate receptor 2 plant, putative [Ricinus communis]
10 Hb_003001_100 0.3367160119 - - PREDICTED: uncharacterized protein LOC103334281 [Prunus mume]
11 Hb_001377_400 0.3406726792 - - neutral/alkaline invertase [Manihot esculenta]
12 Hb_015401_010 0.3443398201 - - hypothetical protein VITISV_001548 [Vitis vinifera]
13 Hb_127008_010 0.3466259848 - - PREDICTED: uncharacterized protein LOC105629501 [Jatropha curcas]
14 Hb_002081_070 0.3519585301 - - PREDICTED: pyridoxal kinase [Jatropha curcas]
15 Hb_000208_030 0.3558447438 - - -
16 Hb_003322_010 0.3577862923 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
17 Hb_000979_050 0.3580880383 - - -
18 Hb_167467_010 0.3618230205 - - hypothetical protein CICLE_v10029508mg [Citrus clementina]
19 Hb_000529_100 0.3620430483 - - hypothetical protein POPTR_0009s05980g [Populus trichocarpa]
20 Hb_004129_030 0.3622528609 - - PREDICTED: cytochrome b561 domain-containing protein At2g30890-like isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_000200_320 Hb_000200_320 Hb_037964_010 Hb_037964_010 Hb_000200_320--Hb_037964_010 Hb_000028_120 Hb_000028_120 Hb_000200_320--Hb_000028_120 Hb_000803_040 Hb_000803_040 Hb_000200_320--Hb_000803_040 Hb_004931_010 Hb_004931_010 Hb_000200_320--Hb_004931_010 Hb_000749_080 Hb_000749_080 Hb_000200_320--Hb_000749_080 Hb_000094_260 Hb_000094_260 Hb_000200_320--Hb_000094_260 Hb_000008_260 Hb_000008_260 Hb_037964_010--Hb_000008_260 Hb_009467_030 Hb_009467_030 Hb_037964_010--Hb_009467_030 Hb_005736_040 Hb_005736_040 Hb_037964_010--Hb_005736_040 Hb_001787_040 Hb_001787_040 Hb_037964_010--Hb_001787_040 Hb_006452_150 Hb_006452_150 Hb_037964_010--Hb_006452_150 Hb_002272_040 Hb_002272_040 Hb_000028_120--Hb_002272_040 Hb_004354_010 Hb_004354_010 Hb_000028_120--Hb_004354_010 Hb_003041_060 Hb_003041_060 Hb_000028_120--Hb_003041_060 Hb_111722_010 Hb_111722_010 Hb_000028_120--Hb_111722_010 Hb_003416_050 Hb_003416_050 Hb_000028_120--Hb_003416_050 Hb_032202_030 Hb_032202_030 Hb_000803_040--Hb_032202_030 Hb_000803_040--Hb_000749_080 Hb_148891_010 Hb_148891_010 Hb_000803_040--Hb_148891_010 Hb_000529_240 Hb_000529_240 Hb_000803_040--Hb_000529_240 Hb_003322_010 Hb_003322_010 Hb_000803_040--Hb_003322_010 Hb_000445_190 Hb_000445_190 Hb_000803_040--Hb_000445_190 Hb_001186_080 Hb_001186_080 Hb_004931_010--Hb_001186_080 Hb_001017_080 Hb_001017_080 Hb_004931_010--Hb_001017_080 Hb_004931_010--Hb_003322_010 Hb_000191_030 Hb_000191_030 Hb_004931_010--Hb_000191_030 Hb_153216_010 Hb_153216_010 Hb_004931_010--Hb_153216_010 Hb_001504_050 Hb_001504_050 Hb_004931_010--Hb_001504_050 Hb_000749_080--Hb_037964_010 Hb_000749_080--Hb_001186_080 Hb_000111_230 Hb_000111_230 Hb_000749_080--Hb_000111_230 Hb_000749_080--Hb_003322_010 Hb_000987_090 Hb_000987_090 Hb_000749_080--Hb_000987_090 Hb_007416_040 Hb_007416_040 Hb_000094_260--Hb_007416_040 Hb_005222_020 Hb_005222_020 Hb_000094_260--Hb_005222_020 Hb_000003_770 Hb_000003_770 Hb_000094_260--Hb_000003_770 Hb_001379_130 Hb_001379_130 Hb_000094_260--Hb_001379_130 Hb_039305_010 Hb_039305_010 Hb_000094_260--Hb_039305_010 Hb_000275_010 Hb_000275_010 Hb_000094_260--Hb_000275_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.128086 0 0.112028 0.0498331
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.259887 0.204179 0 0.0423637 0

CAGE analysis