Hb_000200_340

Information

Type -
Description -
Location Contig200: 364352-372843
Sequence    

Annotation

kegg
ID vvi:100260292
description pentatricopeptide repeat-containing protein At5g66520-like
nr
ID XP_012080303.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
swissprot
ID Q9FJY7
description Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
trembl
ID A0A067KGA8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11656 PE=4 SV=1
Gene Ontology
ID GO:0016787
description pentatricopeptide repeat-containing protein at5g66520-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20231: 368403-368691 , PASA_asmbl_20232: 367545-371143 , PASA_asmbl_20233: 369335-369736 , PASA_asmbl_20234: 367635-367800 , PASA_asmbl_20235: 368840-368951
cDNA
(Sanger)
(ID:Location)		 024_C22.ab1: 368403-368691 , 024_O10.ab1: 368403-368691

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000200_340 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
2 Hb_001671_020 0.0686745832 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08510 [Jatropha curcas]
3 Hb_000186_240 0.0710157188 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
4 Hb_189003_080 0.0724768282 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
5 Hb_000567_260 0.0765849088 - - BnaA09g41440D [Brassica napus]
6 Hb_000457_150 0.0791365709 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
7 Hb_055062_030 0.0854144366 - - PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Jatropha curcas]
8 Hb_131864_040 0.0870581752 - - PREDICTED: uncharacterized protein LOC105649406 isoform X1 [Jatropha curcas]
9 Hb_016065_010 0.0875362797 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08305 [Jatropha curcas]
10 Hb_001329_300 0.0897751745 - - PREDICTED: L-cysteine desulfhydrase [Jatropha curcas]
11 Hb_003151_050 0.0921865049 desease resistance Gene Name: MMR_HSR1 PREDICTED: uncharacterized protein LOC105639402 isoform X1 [Jatropha curcas]
12 Hb_000110_160 0.092461258 - - conserved hypothetical protein [Ricinus communis]
13 Hb_178968_110 0.0925004482 - - PREDICTED: uncharacterized protein LOC105630268 [Jatropha curcas]
14 Hb_000627_120 0.0938775375 - - PREDICTED: probable adenylate kinase 7, mitochondrial [Jatropha curcas]
15 Hb_008453_090 0.0941903991 - - hypothetical protein JCGZ_08177 [Jatropha curcas]
16 Hb_000205_270 0.0949366435 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]
17 Hb_000091_090 0.0952050029 - - hypothetical protein JCGZ_09031 [Jatropha curcas]
18 Hb_001863_390 0.0957634693 - - PREDICTED: monoacylglycerol lipase ABHD6 [Jatropha curcas]
19 Hb_005147_090 0.0969742935 - - PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X1 [Jatropha curcas]
20 Hb_006846_110 0.0970674242 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61800 [Jatropha curcas]

Gene co-expression network

sample Hb_000200_340 Hb_000200_340 Hb_001671_020 Hb_001671_020 Hb_000200_340--Hb_001671_020 Hb_000186_240 Hb_000186_240 Hb_000200_340--Hb_000186_240 Hb_189003_080 Hb_189003_080 Hb_000200_340--Hb_189003_080 Hb_000567_260 Hb_000567_260 Hb_000200_340--Hb_000567_260 Hb_000457_150 Hb_000457_150 Hb_000200_340--Hb_000457_150 Hb_055062_030 Hb_055062_030 Hb_000200_340--Hb_055062_030 Hb_001671_020--Hb_000567_260 Hb_007380_070 Hb_007380_070 Hb_001671_020--Hb_007380_070 Hb_001671_020--Hb_055062_030 Hb_002603_100 Hb_002603_100 Hb_001671_020--Hb_002603_100 Hb_001671_020--Hb_189003_080 Hb_001243_050 Hb_001243_050 Hb_001671_020--Hb_001243_050 Hb_000592_050 Hb_000592_050 Hb_000186_240--Hb_000592_050 Hb_000179_210 Hb_000179_210 Hb_000186_240--Hb_000179_210 Hb_010638_020 Hb_010638_020 Hb_000186_240--Hb_010638_020 Hb_000110_160 Hb_000110_160 Hb_000186_240--Hb_000110_160 Hb_010863_080 Hb_010863_080 Hb_000186_240--Hb_010863_080 Hb_189003_080--Hb_000567_260 Hb_008695_210 Hb_008695_210 Hb_189003_080--Hb_008695_210 Hb_002016_110 Hb_002016_110 Hb_189003_080--Hb_002016_110 Hb_002026_180 Hb_002026_180 Hb_189003_080--Hb_002026_180 Hb_001248_130 Hb_001248_130 Hb_189003_080--Hb_001248_130 Hb_000614_230 Hb_000614_230 Hb_000567_260--Hb_000614_230 Hb_001329_300 Hb_001329_300 Hb_000567_260--Hb_001329_300 Hb_000567_260--Hb_001248_130 Hb_000567_260--Hb_055062_030 Hb_005532_060 Hb_005532_060 Hb_000457_150--Hb_005532_060 Hb_178968_110 Hb_178968_110 Hb_000457_150--Hb_178968_110 Hb_000297_200 Hb_000297_200 Hb_000457_150--Hb_000297_200 Hb_000457_150--Hb_055062_030 Hb_000997_400 Hb_000997_400 Hb_000457_150--Hb_000997_400 Hb_000457_150--Hb_000567_260 Hb_016065_010 Hb_016065_010 Hb_055062_030--Hb_016065_010 Hb_005488_010 Hb_005488_010 Hb_055062_030--Hb_005488_010 Hb_008289_060 Hb_008289_060 Hb_055062_030--Hb_008289_060 Hb_008453_090 Hb_008453_090 Hb_055062_030--Hb_008453_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.46477 1.58421 1.10761 0.6816 3.17017 3.80049
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.8043 3.65391 5.7923 1.73364 0.728631

CAGE analysis