Hb_000200_350

Information

Type -
Description -
Location Contig200: 373739-378208
Sequence    

Annotation

kegg
ID pop:POPTR_0010s13010g
description POPTRDRAFT_769602; hypothetical protein
nr
ID XP_012075728.1
description PREDICTED: uncharacterized protein LOC105636929 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9HWD4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s13010g PE=4 SV=2
Gene Ontology
ID GO:0016740
description nucleotidylyl transferase superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20236: 373816-377932
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000200_350 0.0 - - PREDICTED: uncharacterized protein LOC105636929 [Jatropha curcas]
2 Hb_006006_060 0.0851855916 - - PREDICTED: triacylglycerol lipase 1 isoform X2 [Jatropha curcas]
3 Hb_000934_110 0.0923438529 - - PREDICTED: protein trichome berefringence-like 7 [Jatropha curcas]
4 Hb_010344_030 0.0942131776 - - conserved hypothetical protein [Ricinus communis]
5 Hb_009020_040 0.0953792598 - - PREDICTED: triacylglycerol lipase 1 isoform X1 [Jatropha curcas]
6 Hb_001157_230 0.0961982911 - - Protein AFR, putative [Ricinus communis]
7 Hb_024184_010 0.1026728748 - - PREDICTED: clustered mitochondria protein-like isoform X1 [Citrus sinensis]
8 Hb_005250_010 0.1035148886 - - hypothetical protein JCGZ_15339 [Jatropha curcas]
9 Hb_001080_070 0.10356913 - - 1,4-alpha-glucan branching enzyme [Manihot esculenta]
10 Hb_174865_040 0.1051492524 - - PREDICTED: crt homolog 1 isoform X2 [Jatropha curcas]
11 Hb_004735_020 0.105794812 - - PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]
12 Hb_001876_040 0.105872956 - - PREDICTED: mucin-5B [Jatropha curcas]
13 Hb_000388_150 0.1066687014 - - hypothetical protein JCGZ_21651 [Jatropha curcas]
14 Hb_002232_390 0.1076504857 - - PREDICTED: uncharacterized protein LOC105635994 [Jatropha curcas]
15 Hb_000014_040 0.1078873041 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000327_110 0.1114848385 - - hypothetical protein JCGZ_06657 [Jatropha curcas]
17 Hb_000107_250 0.1124007534 - - voltage-gated clc-type chloride channel, putative [Ricinus communis]
18 Hb_023988_030 0.1129954228 - - PREDICTED: transmembrane protein 19 [Vitis vinifera]
19 Hb_001421_090 0.1137751901 - - hypothetical protein RCOM_1278080 [Ricinus communis]
20 Hb_002774_190 0.1139770765 - - Endoplasmic reticulum-Golgi intermediate compartment protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000200_350 Hb_000200_350 Hb_006006_060 Hb_006006_060 Hb_000200_350--Hb_006006_060 Hb_000934_110 Hb_000934_110 Hb_000200_350--Hb_000934_110 Hb_010344_030 Hb_010344_030 Hb_000200_350--Hb_010344_030 Hb_009020_040 Hb_009020_040 Hb_000200_350--Hb_009020_040 Hb_001157_230 Hb_001157_230 Hb_000200_350--Hb_001157_230 Hb_024184_010 Hb_024184_010 Hb_000200_350--Hb_024184_010 Hb_022693_130 Hb_022693_130 Hb_006006_060--Hb_022693_130 Hb_000388_150 Hb_000388_150 Hb_006006_060--Hb_000388_150 Hb_006006_060--Hb_010344_030 Hb_011926_040 Hb_011926_040 Hb_006006_060--Hb_011926_040 Hb_010984_020 Hb_010984_020 Hb_006006_060--Hb_010984_020 Hb_000172_350 Hb_000172_350 Hb_000934_110--Hb_000172_350 Hb_000589_110 Hb_000589_110 Hb_000934_110--Hb_000589_110 Hb_005250_010 Hb_005250_010 Hb_000934_110--Hb_005250_010 Hb_007769_040 Hb_007769_040 Hb_000934_110--Hb_007769_040 Hb_003462_060 Hb_003462_060 Hb_000934_110--Hb_003462_060 Hb_010344_030--Hb_005250_010 Hb_010344_030--Hb_000388_150 Hb_004735_020 Hb_004735_020 Hb_010344_030--Hb_004735_020 Hb_010344_030--Hb_003462_060 Hb_001220_050 Hb_001220_050 Hb_009020_040--Hb_001220_050 Hb_009020_040--Hb_000388_150 Hb_009020_040--Hb_005250_010 Hb_002232_390 Hb_002232_390 Hb_009020_040--Hb_002232_390 Hb_003475_020 Hb_003475_020 Hb_009020_040--Hb_003475_020 Hb_001876_040 Hb_001876_040 Hb_001157_230--Hb_001876_040 Hb_000212_120 Hb_000212_120 Hb_001157_230--Hb_000212_120 Hb_022250_010 Hb_022250_010 Hb_001157_230--Hb_022250_010 Hb_032202_220 Hb_032202_220 Hb_001157_230--Hb_032202_220 Hb_001157_230--Hb_024184_010 Hb_001029_040 Hb_001029_040 Hb_001157_230--Hb_001029_040 Hb_024184_010--Hb_001876_040 Hb_003125_220 Hb_003125_220 Hb_024184_010--Hb_003125_220 Hb_024184_010--Hb_000212_120 Hb_002883_030 Hb_002883_030 Hb_024184_010--Hb_002883_030 Hb_007545_010 Hb_007545_010 Hb_024184_010--Hb_007545_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.2775 7.53428 13.7418 22.8483 11.0592 11.4071
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.67706 6.98849 4.71177 8.13901 32.059

CAGE analysis