Hb_000200_380

Information

Type -
Description -
Location Contig200: 404698-411215
Sequence    

Annotation

kegg
ID rcu:RCOM_1311110
description hypothetical protein
nr
ID XP_012075733.1
description PREDICTED: uncharacterized protein LOC105636933 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KRW6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09323 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20239: 404337-411154 , PASA_asmbl_20241: 407428-408029
cDNA
(Sanger)
(ID:Location)		 017_H24.ab1: 404337-405108

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000200_380 0.0 - - PREDICTED: uncharacterized protein LOC105636933 isoform X2 [Jatropha curcas]
2 Hb_000343_250 0.0593929923 - - PREDICTED: protein CASC3 [Jatropha curcas]
3 Hb_004097_070 0.0607215345 - - PREDICTED: F-box protein At2g26160-like [Jatropha curcas]
4 Hb_002732_040 0.0622878926 - - PREDICTED: uncharacterized protein LOC105628163 isoform X1 [Jatropha curcas]
5 Hb_019280_030 0.0664206702 - - -
6 Hb_033642_030 0.0668964728 - - PREDICTED: G-protein coupled receptor 1 isoform X1 [Jatropha curcas]
7 Hb_002272_130 0.0682498788 - - PREDICTED: DNA excision repair protein ERCC-1 [Jatropha curcas]
8 Hb_003371_110 0.0683968667 - - PREDICTED: protein EMSY-LIKE 3 [Jatropha curcas]
9 Hb_000789_310 0.0705388389 - - PREDICTED: E3 ubiquitin-protein ligase PRT1 [Jatropha curcas]
10 Hb_000462_060 0.0733256146 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
11 Hb_014361_070 0.0739122192 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
12 Hb_008406_200 0.0746066123 transcription factor TF Family: SNF2 conserved hypothetical protein [Ricinus communis]
13 Hb_000060_090 0.0747682244 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-4a [Jatropha curcas]
14 Hb_138596_010 0.0751835825 - - PREDICTED: BTB/POZ domain-containing protein At2g13690 [Jatropha curcas]
15 Hb_000346_060 0.0756260066 - - hypothetical protein JCGZ_19590 [Jatropha curcas]
16 Hb_000345_380 0.0758867927 - - PREDICTED: long chain acyl-CoA synthetase 7, peroxisomal [Jatropha curcas]
17 Hb_007747_040 0.076713575 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
18 Hb_016172_020 0.0771216417 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial-like [Jatropha curcas]
19 Hb_005779_080 0.0775846556 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
20 Hb_033720_010 0.0779060471 - - PREDICTED: uncharacterized protein LOC105648843 [Jatropha curcas]

Gene co-expression network

sample Hb_000200_380 Hb_000200_380 Hb_000343_250 Hb_000343_250 Hb_000200_380--Hb_000343_250 Hb_004097_070 Hb_004097_070 Hb_000200_380--Hb_004097_070 Hb_002732_040 Hb_002732_040 Hb_000200_380--Hb_002732_040 Hb_019280_030 Hb_019280_030 Hb_000200_380--Hb_019280_030 Hb_033642_030 Hb_033642_030 Hb_000200_380--Hb_033642_030 Hb_002272_130 Hb_002272_130 Hb_000200_380--Hb_002272_130 Hb_000343_250--Hb_002732_040 Hb_000462_060 Hb_000462_060 Hb_000343_250--Hb_000462_060 Hb_008406_200 Hb_008406_200 Hb_000343_250--Hb_008406_200 Hb_000346_060 Hb_000346_060 Hb_000343_250--Hb_000346_060 Hb_004963_030 Hb_004963_030 Hb_000343_250--Hb_004963_030 Hb_001789_190 Hb_001789_190 Hb_004097_070--Hb_001789_190 Hb_007657_010 Hb_007657_010 Hb_004097_070--Hb_007657_010 Hb_004097_070--Hb_000346_060 Hb_004097_070--Hb_019280_030 Hb_001635_040 Hb_001635_040 Hb_004097_070--Hb_001635_040 Hb_007747_040 Hb_007747_040 Hb_002732_040--Hb_007747_040 Hb_002732_040--Hb_000462_060 Hb_020378_030 Hb_020378_030 Hb_002732_040--Hb_020378_030 Hb_000866_460 Hb_000866_460 Hb_002732_040--Hb_000866_460 Hb_000327_270 Hb_000327_270 Hb_002732_040--Hb_000327_270 Hb_001922_150 Hb_001922_150 Hb_019280_030--Hb_001922_150 Hb_007416_340 Hb_007416_340 Hb_019280_030--Hb_007416_340 Hb_000484_030 Hb_000484_030 Hb_019280_030--Hb_000484_030 Hb_019280_030--Hb_033642_030 Hb_000789_310 Hb_000789_310 Hb_033642_030--Hb_000789_310 Hb_033642_030--Hb_002272_130 Hb_007416_300 Hb_007416_300 Hb_033642_030--Hb_007416_300 Hb_002947_030 Hb_002947_030 Hb_033642_030--Hb_002947_030 Hb_000060_090 Hb_000060_090 Hb_033642_030--Hb_000060_090 Hb_002272_130--Hb_000462_060 Hb_000035_110 Hb_000035_110 Hb_002272_130--Hb_000035_110 Hb_002398_030 Hb_002398_030 Hb_002272_130--Hb_002398_030 Hb_032986_010 Hb_032986_010 Hb_002272_130--Hb_032986_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.6677 25.4158 23.1988 20.7986 24.5463 34.3157
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.0912 17.2029 18.3623 14.3952 23.737

CAGE analysis