Hb_000201_050

Information

Type -
Description -
Location Contig201: 80577-82590
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20420: 80293-112332
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000201_050 0.0 - - -
2 Hb_003711_050 0.0825007701 - - Isoflavone reductase, putative [Ricinus communis]
3 Hb_032260_040 0.084169466 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001584_250 0.0856022566 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
5 Hb_001502_010 0.0927203374 - - hypothetical protein JCGZ_04288 [Jatropha curcas]
6 Hb_027746_030 0.0943559428 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000422_060 0.0980168412 transcription factor TF Family: OFP hypothetical protein RCOM_1282480 [Ricinus communis]
8 Hb_012217_010 0.0981420225 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]
9 Hb_002186_170 0.099514751 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
10 Hb_021443_010 0.1017698035 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 1 [Jatropha curcas]
11 Hb_032299_020 0.1027131999 - - tonoplast intrinsic protein, putative [Ricinus communis]
12 Hb_000007_020 0.1032188381 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
13 Hb_000349_280 0.1035956091 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000227_350 0.104212512 - - hypothetical protein CICLE_v10006537mg [Citrus clementina]
15 Hb_008200_010 0.1052453327 - - PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]
16 Hb_007441_100 0.1053292172 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 12 [Populus euphratica]
17 Hb_000438_180 0.115133317 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
18 Hb_002053_020 0.1163950674 - - PREDICTED: MATE efflux family protein DTX1 [Jatropha curcas]
19 Hb_008566_070 0.1194789775 - - conserved hypothetical protein [Ricinus communis]
20 Hb_091140_020 0.1202699815 - - PREDICTED: uncharacterized protein LOC105640903 [Jatropha curcas]

Gene co-expression network

sample Hb_000201_050 Hb_000201_050 Hb_003711_050 Hb_003711_050 Hb_000201_050--Hb_003711_050 Hb_032260_040 Hb_032260_040 Hb_000201_050--Hb_032260_040 Hb_001584_250 Hb_001584_250 Hb_000201_050--Hb_001584_250 Hb_001502_010 Hb_001502_010 Hb_000201_050--Hb_001502_010 Hb_027746_030 Hb_027746_030 Hb_000201_050--Hb_027746_030 Hb_000422_060 Hb_000422_060 Hb_000201_050--Hb_000422_060 Hb_021443_010 Hb_021443_010 Hb_003711_050--Hb_021443_010 Hb_003711_050--Hb_032260_040 Hb_000438_180 Hb_000438_180 Hb_003711_050--Hb_000438_180 Hb_003711_050--Hb_001584_250 Hb_000853_140 Hb_000853_140 Hb_003711_050--Hb_000853_140 Hb_012217_010 Hb_012217_010 Hb_032260_040--Hb_012217_010 Hb_008406_170 Hb_008406_170 Hb_032260_040--Hb_008406_170 Hb_032260_040--Hb_021443_010 Hb_032260_040--Hb_000853_140 Hb_032299_020 Hb_032299_020 Hb_001584_250--Hb_032299_020 Hb_000429_080 Hb_000429_080 Hb_001584_250--Hb_000429_080 Hb_001584_250--Hb_000438_180 Hb_009851_120 Hb_009851_120 Hb_001584_250--Hb_009851_120 Hb_000007_020 Hb_000007_020 Hb_001584_250--Hb_000007_020 Hb_008200_010 Hb_008200_010 Hb_001502_010--Hb_008200_010 Hb_027402_110 Hb_027402_110 Hb_001502_010--Hb_027402_110 Hb_001502_010--Hb_000007_020 Hb_001502_010--Hb_001584_250 Hb_001502_010--Hb_000429_080 Hb_091140_020 Hb_091140_020 Hb_027746_030--Hb_091140_020 Hb_027746_030--Hb_003711_050 Hb_002186_170 Hb_002186_170 Hb_027746_030--Hb_002186_170 Hb_027746_030--Hb_032260_040 Hb_027746_030--Hb_012217_010 Hb_000422_060--Hb_032299_020 Hb_007919_010 Hb_007919_010 Hb_000422_060--Hb_007919_010 Hb_000349_280 Hb_000349_280 Hb_000422_060--Hb_000349_280 Hb_000098_230 Hb_000098_230 Hb_000422_060--Hb_000098_230 Hb_000422_060--Hb_002186_170 Hb_000422_060--Hb_001584_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.110779 15.9089 3.10094 57.4512 0.165984 0.499206
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.338932 6.10067

CAGE analysis