Hb_000201_120

Information

Type -
Description -
Location Contig201: 160431-165897
Sequence    

Annotation

kegg
ID cmo:103489093
description ubiquitin-conjugating enzyme E2 2-like
nr
ID ADV04061.1
description ubiquitin-protein ligase 2a [Hevea brasiliensis]
swissprot
ID P42745
description Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1
trembl
ID F8RWT0
description Ubiquitin-protein ligase 2a OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0016874
description ubiquitin-conjugating enzyme e2 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20426: 160431-165681 , PASA_asmbl_20427: 160679-165644 , PASA_asmbl_20428: 160345-165676
cDNA
(Sanger)
(ID:Location)		 013_I12.ab1: 160504-165634 , 022_K08.ab1: 160724-160847

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000201_120 0.0 - - ubiquitin-protein ligase 2a [Hevea brasiliensis]
2 Hb_003581_150 0.0648336736 - - hypothetical protein CICLE_v10032366mg [Citrus clementina]
3 Hb_002830_020 0.0667987182 - - PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]
4 Hb_001016_030 0.0675688361 - - PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
5 Hb_001616_040 0.0706813342 - - PREDICTED: uncharacterized protein LOC105644362 [Jatropha curcas]
6 Hb_000840_030 0.0711644617 transcription factor TF Family: IWS1 PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c isoform X2 [Jatropha curcas]
7 Hb_000574_480 0.0726674424 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
8 Hb_000331_080 0.0735738407 - - PREDICTED: UPF0235 protein At5g63440 isoform X1 [Gossypium raimondii]
9 Hb_000668_040 0.0748071285 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
10 Hb_000987_070 0.0761067756 - - Inflorescence meristem receptor-like kinase 2 isoform 1 [Theobroma cacao]
11 Hb_000111_330 0.0766137849 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
12 Hb_010175_040 0.0767820078 - - PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Jatropha curcas]
13 Hb_165132_010 0.0774093828 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
14 Hb_002030_040 0.0776212239 - - hypothetical protein JCGZ_18677 [Jatropha curcas]
15 Hb_029584_060 0.0786290279 - - Grave disease carrier protein, putative [Ricinus communis]
16 Hb_001105_030 0.0798601214 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]
17 Hb_000103_320 0.0803805799 - - Stem-specific protein TSJT1, putative [Ricinus communis]
18 Hb_012053_070 0.080893669 - - PREDICTED: uncharacterized protein LOC105637344 [Jatropha curcas]
19 Hb_007441_330 0.0811971425 - - PREDICTED: acyl carrier protein 1, mitochondrial [Jatropha curcas]
20 Hb_000334_210 0.0816040324 - - PREDICTED: uncharacterized protein LOC105628719 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000201_120 Hb_000201_120 Hb_003581_150 Hb_003581_150 Hb_000201_120--Hb_003581_150 Hb_002830_020 Hb_002830_020 Hb_000201_120--Hb_002830_020 Hb_001016_030 Hb_001016_030 Hb_000201_120--Hb_001016_030 Hb_001616_040 Hb_001616_040 Hb_000201_120--Hb_001616_040 Hb_000840_030 Hb_000840_030 Hb_000201_120--Hb_000840_030 Hb_000574_480 Hb_000574_480 Hb_000201_120--Hb_000574_480 Hb_000103_320 Hb_000103_320 Hb_003581_150--Hb_000103_320 Hb_000934_250 Hb_000934_250 Hb_003581_150--Hb_000934_250 Hb_003581_150--Hb_002830_020 Hb_010175_040 Hb_010175_040 Hb_003581_150--Hb_010175_040 Hb_129204_030 Hb_129204_030 Hb_003581_150--Hb_129204_030 Hb_002431_050 Hb_002431_050 Hb_002830_020--Hb_002431_050 Hb_012022_120 Hb_012022_120 Hb_002830_020--Hb_012022_120 Hb_002864_050 Hb_002864_050 Hb_002830_020--Hb_002864_050 Hb_094608_010 Hb_094608_010 Hb_002830_020--Hb_094608_010 Hb_001140_370 Hb_001140_370 Hb_001016_030--Hb_001140_370 Hb_001016_030--Hb_001616_040 Hb_001421_060 Hb_001421_060 Hb_001016_030--Hb_001421_060 Hb_003126_090 Hb_003126_090 Hb_001016_030--Hb_003126_090 Hb_001016_030--Hb_002830_020 Hb_000920_110 Hb_000920_110 Hb_001616_040--Hb_000920_110 Hb_006541_010 Hb_006541_010 Hb_001616_040--Hb_006541_010 Hb_000030_290 Hb_000030_290 Hb_001616_040--Hb_000030_290 Hb_001616_040--Hb_010175_040 Hb_003226_100 Hb_003226_100 Hb_001616_040--Hb_003226_100 Hb_153112_020 Hb_153112_020 Hb_000840_030--Hb_153112_020 Hb_000331_080 Hb_000331_080 Hb_000840_030--Hb_000331_080 Hb_002030_040 Hb_002030_040 Hb_000840_030--Hb_002030_040 Hb_005539_350 Hb_005539_350 Hb_000840_030--Hb_005539_350 Hb_002874_190 Hb_002874_190 Hb_000840_030--Hb_002874_190 Hb_006541_030 Hb_006541_030 Hb_000840_030--Hb_006541_030 Hb_003656_070 Hb_003656_070 Hb_000574_480--Hb_003656_070 Hb_001998_050 Hb_001998_050 Hb_000574_480--Hb_001998_050 Hb_002963_010 Hb_002963_010 Hb_000574_480--Hb_002963_010 Hb_008173_090 Hb_008173_090 Hb_000574_480--Hb_008173_090 Hb_012675_060 Hb_012675_060 Hb_000574_480--Hb_012675_060 Hb_000173_220 Hb_000173_220 Hb_000574_480--Hb_000173_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
107.096 46.318 64.2068 83.9202 88.5031 86.1917
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
202.824 221.681 137.109 52.999 59.7294

CAGE analysis