Hb_000202_040

Information

Type -
Description -
Location Contig202: 109975-111885
Sequence    

Annotation

kegg
ID tcc:TCM_015806
description SBP family protein
nr
ID XP_012075297.1
description PREDICTED: E3 ubiquitin-protein ligase BOI-like [Jatropha curcas]
swissprot
ID Q9FHE4
description BOI-related E3 ubiquitin-protein ligase 1 OS=Arabidopsis thaliana GN=BRG1 PE=1 SV=1
trembl
ID A0A067LNC9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11882 PE=4 SV=1
Gene Ontology
ID GO:0005634
description e3 ubiquitin-protein ligase boi-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20535: 109961-112292 , PASA_asmbl_20536: 111513-111647
cDNA
(Sanger)
(ID:Location)		 002_G16.ab1: 110550-111681 , 032_K15.ab1: 110886-111737 , 046_D24.ab1: 111410-112292

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000202_040 0.0 - - PREDICTED: E3 ubiquitin-protein ligase BOI-like [Jatropha curcas]
2 Hb_005054_230 0.0914618495 - - PREDICTED: wiskott-Aldrich syndrome protein family member 2 [Jatropha curcas]
3 Hb_001049_090 0.0964695145 - - 6-phosphogluconate dehydrogenase, putative [Ricinus communis]
4 Hb_000930_030 0.0992766516 - - PREDICTED: uncharacterized protein LOC105629651 [Jatropha curcas]
5 Hb_062135_030 0.1033686211 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
6 Hb_000521_080 0.1078663326 - - Zinc finger BED domain-containing 4 [Gossypium arboreum]
7 Hb_002234_180 0.1174826963 - - conserved hypothetical protein [Ricinus communis]
8 Hb_021409_180 0.1177954916 - - PREDICTED: glutamine-dependent NAD(+) synthetase [Jatropha curcas]
9 Hb_000020_190 0.1189410293 - - hypothetical protein RCOM_0452240 [Ricinus communis]
10 Hb_003571_030 0.1198792899 - - hypothetical protein JCGZ_25894 [Jatropha curcas]
11 Hb_000646_050 0.120183554 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Jatropha curcas]
12 Hb_010519_050 0.1202235778 - - galactokinase, putative [Ricinus communis]
13 Hb_023344_120 0.1221436282 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Jatropha curcas]
14 Hb_001500_050 0.123598953 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
15 Hb_000676_250 0.123701587 - - PREDICTED: protein RTE1-HOMOLOG isoform X1 [Jatropha curcas]
16 Hb_000958_110 0.1237842449 - - PREDICTED: uncharacterized protein LOC105628719 isoform X1 [Jatropha curcas]
17 Hb_027380_130 0.1243118791 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 23 isoform X2 [Jatropha curcas]
18 Hb_004156_050 0.1271139277 transcription factor TF Family: TCP PREDICTED: transcription factor TCP23-like [Populus euphratica]
19 Hb_001227_060 0.1280186383 - - PREDICTED: pentatricopeptide repeat-containing protein At4g20740 [Jatropha curcas]
20 Hb_000335_030 0.1280442857 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17033 [Jatropha curcas]

Gene co-expression network

sample Hb_000202_040 Hb_000202_040 Hb_005054_230 Hb_005054_230 Hb_000202_040--Hb_005054_230 Hb_001049_090 Hb_001049_090 Hb_000202_040--Hb_001049_090 Hb_000930_030 Hb_000930_030 Hb_000202_040--Hb_000930_030 Hb_062135_030 Hb_062135_030 Hb_000202_040--Hb_062135_030 Hb_000521_080 Hb_000521_080 Hb_000202_040--Hb_000521_080 Hb_002234_180 Hb_002234_180 Hb_000202_040--Hb_002234_180 Hb_002107_030 Hb_002107_030 Hb_005054_230--Hb_002107_030 Hb_001369_730 Hb_001369_730 Hb_005054_230--Hb_001369_730 Hb_005054_230--Hb_000930_030 Hb_000009_090 Hb_000009_090 Hb_005054_230--Hb_000009_090 Hb_002890_290 Hb_002890_290 Hb_005054_230--Hb_002890_290 Hb_005116_160 Hb_005116_160 Hb_005054_230--Hb_005116_160 Hb_001227_060 Hb_001227_060 Hb_001049_090--Hb_001227_060 Hb_000363_240 Hb_000363_240 Hb_001049_090--Hb_000363_240 Hb_000100_180 Hb_000100_180 Hb_001049_090--Hb_000100_180 Hb_011129_040 Hb_011129_040 Hb_001049_090--Hb_011129_040 Hb_000050_190 Hb_000050_190 Hb_001049_090--Hb_000050_190 Hb_002232_410 Hb_002232_410 Hb_000930_030--Hb_002232_410 Hb_000732_010 Hb_000732_010 Hb_000930_030--Hb_000732_010 Hb_000002_340 Hb_000002_340 Hb_000930_030--Hb_000002_340 Hb_010519_050 Hb_010519_050 Hb_000930_030--Hb_010519_050 Hb_005271_220 Hb_005271_220 Hb_000930_030--Hb_005271_220 Hb_001141_020 Hb_001141_020 Hb_062135_030--Hb_001141_020 Hb_000020_190 Hb_000020_190 Hb_062135_030--Hb_000020_190 Hb_001124_160 Hb_001124_160 Hb_062135_030--Hb_001124_160 Hb_009467_060 Hb_009467_060 Hb_062135_030--Hb_009467_060 Hb_002496_010 Hb_002496_010 Hb_062135_030--Hb_002496_010 Hb_001198_100 Hb_001198_100 Hb_062135_030--Hb_001198_100 Hb_002141_030 Hb_002141_030 Hb_000521_080--Hb_002141_030 Hb_000521_080--Hb_062135_030 Hb_000212_330 Hb_000212_330 Hb_000521_080--Hb_000212_330 Hb_000094_300 Hb_000094_300 Hb_000521_080--Hb_000094_300 Hb_000521_080--Hb_005054_230 Hb_002728_070 Hb_002728_070 Hb_000521_080--Hb_002728_070 Hb_000331_680 Hb_000331_680 Hb_002234_180--Hb_000331_680 Hb_000077_140 Hb_000077_140 Hb_002234_180--Hb_000077_140 Hb_010368_010 Hb_010368_010 Hb_002234_180--Hb_010368_010 Hb_181729_010 Hb_181729_010 Hb_002234_180--Hb_181729_010 Hb_003747_100 Hb_003747_100 Hb_002234_180--Hb_003747_100 Hb_004586_300 Hb_004586_300 Hb_002234_180--Hb_004586_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.9848 19.3837 14.0599 21.9707 14.8164 16.3855
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.8593 13.8608 28.3319 17.6838 20.7398

CAGE analysis