Hb_000202_070

Information

Type -
Description -
Location Contig202: 169749-170194
Sequence    

Annotation

kegg
ID -
description -
nr
ID CBL94163.1
description putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]
swissprot
ID -
description -
trembl
ID E4Z8N8
description Putative RNA-directed DNA polymerase (Reverse transcriptase) OS=Malus domestica PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000202_070 0.0 - - putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]
2 Hb_002316_020 0.1213055884 - - PREDICTED: uncharacterized protein LOC105640407 [Jatropha curcas]
3 Hb_010174_180 0.1343048675 - - protein binding protein, putative [Ricinus communis]
4 Hb_003607_140 0.143366778 - - 3-ketoacyl-CoA thiolase B, putative [Ricinus communis]
5 Hb_000210_040 0.1435265844 - - PREDICTED: putative HVA22-like protein g [Jatropha curcas]
6 Hb_000046_430 0.1458300117 - - hypothetical protein JCGZ_02013 [Jatropha curcas]
7 Hb_000901_010 0.1461283883 - - PREDICTED: putative G-type lectin S-receptor-like serine/threonine-protein kinase At1g61610 [Jatropha curcas]
8 Hb_002078_320 0.1462825901 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1 [Jatropha curcas]
9 Hb_000189_160 0.1471501067 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
10 Hb_001135_010 0.1480620774 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
11 Hb_002635_020 0.1503585534 - - hypothetical protein POPTR_0018s09790g [Populus trichocarpa]
12 Hb_005582_030 0.1506481936 - - PREDICTED: protein N-lysine methyltransferase METTL21A-like [Jatropha curcas]
13 Hb_030982_050 0.1520111295 - - PREDICTED: gamma-glutamyl hydrolase 2-like [Jatropha curcas]
14 Hb_001675_270 0.1533283403 - - PREDICTED: probable inactive nicotinamidase At3g16190 [Jatropha curcas]
15 Hb_002601_140 0.1569261066 - - signal transducer, putative [Ricinus communis]
16 Hb_002817_050 0.1580927069 transcription factor TF Family: Orphans hypothetical protein POPTR_0004s16810g, partial [Populus trichocarpa]
17 Hb_000062_050 0.1588202652 - - protein binding protein, putative [Ricinus communis]
18 Hb_000694_050 0.1590161793 - - Nuclease PA3, putative [Ricinus communis]
19 Hb_000987_020 0.1594399696 - - PREDICTED: protein trichome birefringence-like 35 [Jatropha curcas]
20 Hb_005568_050 0.1594650879 - - ascorbate peroxidase [Hevea brasiliensis]

Gene co-expression network

sample Hb_000202_070 Hb_000202_070 Hb_002316_020 Hb_002316_020 Hb_000202_070--Hb_002316_020 Hb_010174_180 Hb_010174_180 Hb_000202_070--Hb_010174_180 Hb_003607_140 Hb_003607_140 Hb_000202_070--Hb_003607_140 Hb_000210_040 Hb_000210_040 Hb_000202_070--Hb_000210_040 Hb_000046_430 Hb_000046_430 Hb_000202_070--Hb_000046_430 Hb_000901_010 Hb_000901_010 Hb_000202_070--Hb_000901_010 Hb_002316_020--Hb_010174_180 Hb_031385_010 Hb_031385_010 Hb_002316_020--Hb_031385_010 Hb_001675_270 Hb_001675_270 Hb_002316_020--Hb_001675_270 Hb_002316_020--Hb_003607_140 Hb_000230_360 Hb_000230_360 Hb_002316_020--Hb_000230_360 Hb_001048_100 Hb_001048_100 Hb_002316_020--Hb_001048_100 Hb_010174_180--Hb_003607_140 Hb_010174_180--Hb_031385_010 Hb_002635_020 Hb_002635_020 Hb_010174_180--Hb_002635_020 Hb_010174_180--Hb_001675_270 Hb_000731_210 Hb_000731_210 Hb_010174_180--Hb_000731_210 Hb_006469_090 Hb_006469_090 Hb_003607_140--Hb_006469_090 Hb_001439_010 Hb_001439_010 Hb_003607_140--Hb_001439_010 Hb_003607_140--Hb_002635_020 Hb_003607_140--Hb_000210_040 Hb_007894_070 Hb_007894_070 Hb_000210_040--Hb_007894_070 Hb_006414_010 Hb_006414_010 Hb_000210_040--Hb_006414_010 Hb_004421_010 Hb_004421_010 Hb_000210_040--Hb_004421_010 Hb_003879_020 Hb_003879_020 Hb_000210_040--Hb_003879_020 Hb_000659_040 Hb_000659_040 Hb_000210_040--Hb_000659_040 Hb_000189_160 Hb_000189_160 Hb_000046_430--Hb_000189_160 Hb_003849_030 Hb_003849_030 Hb_000046_430--Hb_003849_030 Hb_003224_010 Hb_003224_010 Hb_000046_430--Hb_003224_010 Hb_000689_010 Hb_000689_010 Hb_000046_430--Hb_000689_010 Hb_030982_050 Hb_030982_050 Hb_000046_430--Hb_030982_050 Hb_004611_050 Hb_004611_050 Hb_000046_430--Hb_004611_050 Hb_002078_320 Hb_002078_320 Hb_000901_010--Hb_002078_320 Hb_000987_020 Hb_000987_020 Hb_000901_010--Hb_000987_020 Hb_004946_010 Hb_004946_010 Hb_000901_010--Hb_004946_010 Hb_020805_070 Hb_020805_070 Hb_000901_010--Hb_020805_070 Hb_004855_080 Hb_004855_080 Hb_000901_010--Hb_004855_080 Hb_000260_750 Hb_000260_750 Hb_000901_010--Hb_000260_750
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.170983 1.6562 3.34875 2.40132 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.319056 0 2.07904 2.90242

CAGE analysis