Hb_000203_020

Information

Type -
Description -
Location Contig203: 26106-33900
Sequence    

Annotation

kegg
ID pop:POPTR_0011s07260g
description POPTRDRAFT_568704; hypothetical protein
nr
ID XP_012091783.1
description PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
swissprot
ID Q9SJI9
description Plant cysteine oxidase 4 OS=Arabidopsis thaliana GN=PCO4 PE=1 SV=2
trembl
ID A0A067JNM4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21575 PE=4 SV=1
Gene Ontology
ID GO:0047800
description 2-aminoethanethiol dioxygenase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20785: 26232-34079 , PASA_asmbl_20786: 26282-34079 , PASA_asmbl_20787: 26225-33363 , PASA_asmbl_20788: 27886-32035 , PASA_asmbl_20789: 26242-27566 , PASA_asmbl_20790: 26370-27237
cDNA
(Sanger)
(ID:Location)		 008_J20.ab1: 26232-33171 , 009_A21.ab1: 26233-33268 , 012_K23.ab1: 26242-27566 , 020_A14.ab1: 26232-33363 , 021_P20.ab1: 26242-27565 , 027_H06.ab1: 26242-27380

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000203_020 0.0 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
2 Hb_000915_120 0.0702534883 - - Peptidylprolyl cis/trans isomerase [Theobroma cacao]
3 Hb_012251_010 0.0801326899 - - -
4 Hb_007120_090 0.0851829275 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
5 Hb_000042_260 0.0862135533 - - PREDICTED: uncharacterized protein LOC105632814 [Jatropha curcas]
6 Hb_000045_250 0.0899412457 - - PREDICTED: uncharacterized protein LOC105646572 isoform X1 [Jatropha curcas]
7 Hb_002006_130 0.0905292171 - - PREDICTED: uncharacterized protein LOC105648712 [Jatropha curcas]
8 Hb_012395_130 0.0907761814 - - Os02g0814700 [Oryza sativa Japonica Group]
9 Hb_000997_120 0.0917626171 - - 40S ribosomal protein S15E [Hevea brasiliensis]
10 Hb_002909_130 0.0917751364 - - Uncharacterized protein isoform 1 [Theobroma cacao]
11 Hb_008921_020 0.0935756411 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
12 Hb_172221_010 0.0953455103 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
13 Hb_004007_180 0.0955449444 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
14 Hb_005063_050 0.0963066034 - - PREDICTED: probable prefoldin subunit 4 isoform X1 [Jatropha curcas]
15 Hb_000134_070 0.0966599125 - - 60S ribosomal protein L6, putative [Ricinus communis]
16 Hb_000331_700 0.0966691539 - - PREDICTED: uncharacterized protein LOC105640277 [Jatropha curcas]
17 Hb_000567_410 0.1012500099 - - hypothetical protein JCGZ_12784 [Jatropha curcas]
18 Hb_000093_110 0.102138085 - - PREDICTED: cytochrome b5 isoform A [Jatropha curcas]
19 Hb_002838_030 0.1025822496 - - 40S ribosomal protein S25A [Hevea brasiliensis]
20 Hb_001225_010 0.1028279842 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_000203_020 Hb_000203_020 Hb_000915_120 Hb_000915_120 Hb_000203_020--Hb_000915_120 Hb_012251_010 Hb_012251_010 Hb_000203_020--Hb_012251_010 Hb_007120_090 Hb_007120_090 Hb_000203_020--Hb_007120_090 Hb_000042_260 Hb_000042_260 Hb_000203_020--Hb_000042_260 Hb_000045_250 Hb_000045_250 Hb_000203_020--Hb_000045_250 Hb_002006_130 Hb_002006_130 Hb_000203_020--Hb_002006_130 Hb_002838_030 Hb_002838_030 Hb_000915_120--Hb_002838_030 Hb_000915_120--Hb_002006_130 Hb_002588_010 Hb_002588_010 Hb_000915_120--Hb_002588_010 Hb_006588_080 Hb_006588_080 Hb_000915_120--Hb_006588_080 Hb_000062_390 Hb_000062_390 Hb_000915_120--Hb_000062_390 Hb_012251_010--Hb_000045_250 Hb_174865_010 Hb_174865_010 Hb_012251_010--Hb_174865_010 Hb_000948_220 Hb_000948_220 Hb_012251_010--Hb_000948_220 Hb_012251_010--Hb_000915_120 Hb_012251_010--Hb_000042_260 Hb_000997_120 Hb_000997_120 Hb_007120_090--Hb_000997_120 Hb_001789_050 Hb_001789_050 Hb_007120_090--Hb_001789_050 Hb_007120_090--Hb_002838_030 Hb_007120_090--Hb_000948_220 Hb_000676_160 Hb_000676_160 Hb_007120_090--Hb_000676_160 Hb_012395_130 Hb_012395_130 Hb_007120_090--Hb_012395_130 Hb_019516_100 Hb_019516_100 Hb_000042_260--Hb_019516_100 Hb_172221_010 Hb_172221_010 Hb_000042_260--Hb_172221_010 Hb_000042_260--Hb_002588_010 Hb_002909_130 Hb_002909_130 Hb_000042_260--Hb_002909_130 Hb_000329_020 Hb_000329_020 Hb_000042_260--Hb_000329_020 Hb_026398_010 Hb_026398_010 Hb_000042_260--Hb_026398_010 Hb_000134_070 Hb_000134_070 Hb_000045_250--Hb_000134_070 Hb_003226_210 Hb_003226_210 Hb_000045_250--Hb_003226_210 Hb_007416_020 Hb_007416_020 Hb_000045_250--Hb_007416_020 Hb_001882_070 Hb_001882_070 Hb_000045_250--Hb_001882_070 Hb_002006_130--Hb_002588_010 Hb_007304_070 Hb_007304_070 Hb_002006_130--Hb_007304_070 Hb_000331_700 Hb_000331_700 Hb_002006_130--Hb_000331_700 Hb_000093_110 Hb_000093_110 Hb_002006_130--Hb_000093_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.57709 3.51025 4.56098 11.1759 5.70696 8.76866
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.1917 50.7782 12.9898 6.88742 6.25408

CAGE analysis