Hb_000203_060

Information

Type transcription factor
Description TF Family: G2-like
Location Contig203: 68522-73932
Sequence    

Annotation

kegg
ID pop:POPTR_0004s05660g
description POPTRDRAFT_555668; hypothetical protein
nr
ID XP_002305066.2
description hypothetical protein POPTR_0004s05660g [Populus trichocarpa]
swissprot
ID Q700D9
description Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2
trembl
ID B9H2H4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s05660g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000203_060 0.0 transcription factor TF Family: G2-like hypothetical protein POPTR_0004s05660g [Populus trichocarpa]
2 Hb_120268_010 0.0972758537 - - PREDICTED: chitin elicitor receptor kinase 1-like isoform X3 [Populus euphratica]
3 Hb_004162_040 0.136897836 - - PREDICTED: lysosomal Pro-X carboxypeptidase-like [Crassostrea gigas]
4 Hb_148121_030 0.137925428 - - PREDICTED: zinc-finger homeodomain protein 14 [Gossypium raimondii]
5 Hb_001709_070 0.1392246563 - - carbohydrate binding protein, putative [Ricinus communis]
6 Hb_001623_470 0.139546311 - - ammonium transporter, putative [Ricinus communis]
7 Hb_001769_030 0.1418350819 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
8 Hb_003878_100 0.1460239859 desease resistance Gene Name: NB-ARC LRR and NB-ARC domains-containing disease resistance protein, putative [Theobroma cacao]
9 Hb_124385_010 0.1516863545 - - hypothetical protein JCGZ_13882 [Jatropha curcas]
10 Hb_079158_010 0.1556208497 - - PREDICTED: sperm acrosomal protein FSA-ACR.1-like [Jatropha curcas]
11 Hb_000976_060 0.1752133954 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
12 Hb_000221_170 0.177313994 - - PREDICTED: alcohol dehydrogenase-like 2 [Jatropha curcas]
13 Hb_000512_040 0.1805117764 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
14 Hb_001388_020 0.1823197208 - - PREDICTED: F-box/kelch-repeat protein SKIP20 [Jatropha curcas]
15 Hb_011174_100 0.1844892923 - - ubiquitin-protein ligase, putative [Ricinus communis]
16 Hb_040963_010 0.1848361664 - - PREDICTED: polyneuridine-aldehyde esterase-like [Populus euphratica]
17 Hb_000876_050 0.1875715232 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like [Jatropha curcas]
18 Hb_152718_010 0.1897497568 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
19 Hb_000489_020 0.1917283664 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Populus euphratica]
20 Hb_001266_020 0.1921207378 - - PREDICTED: uncharacterized protein LOC105650395 [Jatropha curcas]

Gene co-expression network

sample Hb_000203_060 Hb_000203_060 Hb_120268_010 Hb_120268_010 Hb_000203_060--Hb_120268_010 Hb_004162_040 Hb_004162_040 Hb_000203_060--Hb_004162_040 Hb_148121_030 Hb_148121_030 Hb_000203_060--Hb_148121_030 Hb_001709_070 Hb_001709_070 Hb_000203_060--Hb_001709_070 Hb_001623_470 Hb_001623_470 Hb_000203_060--Hb_001623_470 Hb_001769_030 Hb_001769_030 Hb_000203_060--Hb_001769_030 Hb_120268_010--Hb_004162_040 Hb_120268_010--Hb_148121_030 Hb_120268_010--Hb_001709_070 Hb_120268_010--Hb_001769_030 Hb_124385_010 Hb_124385_010 Hb_120268_010--Hb_124385_010 Hb_004162_040--Hb_001709_070 Hb_004162_040--Hb_124385_010 Hb_008503_020 Hb_008503_020 Hb_004162_040--Hb_008503_020 Hb_000221_170 Hb_000221_170 Hb_004162_040--Hb_000221_170 Hb_040963_010 Hb_040963_010 Hb_148121_030--Hb_040963_010 Hb_001388_020 Hb_001388_020 Hb_148121_030--Hb_001388_020 Hb_005618_110 Hb_005618_110 Hb_148121_030--Hb_005618_110 Hb_002740_170 Hb_002740_170 Hb_148121_030--Hb_002740_170 Hb_001709_070--Hb_124385_010 Hb_001709_070--Hb_008503_020 Hb_001709_070--Hb_000221_170 Hb_029508_030 Hb_029508_030 Hb_001709_070--Hb_029508_030 Hb_001709_070--Hb_001623_470 Hb_001355_110 Hb_001355_110 Hb_001623_470--Hb_001355_110 Hb_001623_470--Hb_001769_030 Hb_000489_020 Hb_000489_020 Hb_001623_470--Hb_000489_020 Hb_005333_100 Hb_005333_100 Hb_001623_470--Hb_005333_100 Hb_001266_020 Hb_001266_020 Hb_001623_470--Hb_001266_020 Hb_000976_060 Hb_000976_060 Hb_001623_470--Hb_000976_060 Hb_001769_030--Hb_000489_020 Hb_152718_010 Hb_152718_010 Hb_001769_030--Hb_152718_010 Hb_001769_030--Hb_005333_100 Hb_001769_030--Hb_001355_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.1393 0.262082 0.0100363 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0311334 0 0 1.1634 0.307485

CAGE analysis