Hb_000203_080

Information

Type -
Description -
Location Contig203: 108080-111905
Sequence    

Annotation

kegg
ID tcc:TCM_029686
description Xylem bark cysteine peptidase 3 isoform 1
nr
ID XP_007025363.1
description Xylem bark cysteine peptidase 3 isoform 1 [Theobroma cacao]
swissprot
ID P43297
description Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1
trembl
ID A0A061GDL4
description Xylem bark cysteine peptidase 3 isoform 1 OS=Theobroma cacao GN=TCM_029686 PE=3 SV=1
Gene Ontology
ID GO:0008234
description low-temperature-induced cysteine proteinase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20792: 108066-111926
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000203_080 0.0 - - Xylem bark cysteine peptidase 3 isoform 1 [Theobroma cacao]
2 Hb_000840_050 0.081429256 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Vitis vinifera]
3 Hb_001114_120 0.0910531876 - - protein with unknown function [Ricinus communis]
4 Hb_003842_010 0.1009272741 - - receptor protein kinase, putative [Ricinus communis]
5 Hb_001329_110 0.1032698894 - - PREDICTED: uncharacterized protein LOC105642675 [Jatropha curcas]
6 Hb_002622_010 0.1035810909 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
7 Hb_175758_010 0.104218652 - - PREDICTED: aspartic proteinase A1-like isoform X2 [Jatropha curcas]
8 Hb_003085_080 0.105953006 - - nucleic acid binding protein, putative [Ricinus communis]
9 Hb_005276_220 0.1059610949 transcription factor TF Family: bHLH PREDICTED: basic helix-loop-helix protein A [Jatropha curcas]
10 Hb_039022_020 0.1065710217 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
11 Hb_000096_210 0.1086139427 - - PREDICTED: probable carboxylesterase 7 [Jatropha curcas]
12 Hb_009659_040 0.1097275452 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER [Populus euphratica]
13 Hb_000112_050 0.1100160198 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1 [Jatropha curcas]
14 Hb_009554_030 0.110889368 - - PREDICTED: chlorophyll synthase, chloroplastic [Prunus mume]
15 Hb_001660_050 0.1117975442 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Eucalyptus grandis]
16 Hb_000017_320 0.1155685085 transcription factor TF Family: bHLH PREDICTED: transcription factor GLABRA 3-like isoform X1 [Jatropha curcas]
17 Hb_001318_120 0.1160755837 - - PREDICTED: uncharacterized protein LOC105642675 [Jatropha curcas]
18 Hb_002475_030 0.1174480736 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004627_020 0.1181650934 - - Protein MLO, putative [Ricinus communis]
20 Hb_011537_020 0.1181907909 - - PREDICTED: uncharacterized serine-rich protein C215.13-like [Jatropha curcas]

Gene co-expression network

sample Hb_000203_080 Hb_000203_080 Hb_000840_050 Hb_000840_050 Hb_000203_080--Hb_000840_050 Hb_001114_120 Hb_001114_120 Hb_000203_080--Hb_001114_120 Hb_003842_010 Hb_003842_010 Hb_000203_080--Hb_003842_010 Hb_001329_110 Hb_001329_110 Hb_000203_080--Hb_001329_110 Hb_002622_010 Hb_002622_010 Hb_000203_080--Hb_002622_010 Hb_175758_010 Hb_175758_010 Hb_000203_080--Hb_175758_010 Hb_138606_020 Hb_138606_020 Hb_000840_050--Hb_138606_020 Hb_000840_050--Hb_175758_010 Hb_000840_050--Hb_001329_110 Hb_009659_040 Hb_009659_040 Hb_000840_050--Hb_009659_040 Hb_010417_100 Hb_010417_100 Hb_000840_050--Hb_010417_100 Hb_002307_010 Hb_002307_010 Hb_001114_120--Hb_002307_010 Hb_000112_050 Hb_000112_050 Hb_001114_120--Hb_000112_050 Hb_003847_050 Hb_003847_050 Hb_001114_120--Hb_003847_050 Hb_002448_020 Hb_002448_020 Hb_001114_120--Hb_002448_020 Hb_007386_030 Hb_007386_030 Hb_001114_120--Hb_007386_030 Hb_001345_010 Hb_001345_010 Hb_003842_010--Hb_001345_010 Hb_005276_220 Hb_005276_220 Hb_003842_010--Hb_005276_220 Hb_002475_030 Hb_002475_030 Hb_003842_010--Hb_002475_030 Hb_003085_080 Hb_003085_080 Hb_003842_010--Hb_003085_080 Hb_009150_060 Hb_009150_060 Hb_003842_010--Hb_009150_060 Hb_001329_110--Hb_175758_010 Hb_000011_120 Hb_000011_120 Hb_001329_110--Hb_000011_120 Hb_001318_120 Hb_001318_120 Hb_001329_110--Hb_001318_120 Hb_010519_020 Hb_010519_020 Hb_001329_110--Hb_010519_020 Hb_001421_010 Hb_001421_010 Hb_001329_110--Hb_001421_010 Hb_001660_050 Hb_001660_050 Hb_002622_010--Hb_001660_050 Hb_001607_070 Hb_001607_070 Hb_002622_010--Hb_001607_070 Hb_004943_010 Hb_004943_010 Hb_002622_010--Hb_004943_010 Hb_002622_010--Hb_009659_040 Hb_029576_080 Hb_029576_080 Hb_002622_010--Hb_029576_080 Hb_175758_010--Hb_001421_010 Hb_175758_010--Hb_010519_020 Hb_175758_010--Hb_000011_120 Hb_175758_010--Hb_001318_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.267328 38.3352 42.0333 47.952 0 0.205914
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.238516 0.0187668 0.142155 95.2263 43.205

CAGE analysis