Hb_000203_090

Information

Type -
Description -
Location Contig203: 137181-145163
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_002319090.1
description hypothetical protein POPTR_0013s04080g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9I5L3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s04080g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000203_090 0.0 - - hypothetical protein POPTR_0013s04080g [Populus trichocarpa]
2 Hb_039410_010 0.0561685095 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
3 Hb_000167_090 0.0730692642 - - conserved hypothetical protein [Ricinus communis]
4 Hb_182625_010 0.08109166 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
5 Hb_000769_030 0.0891866267 - - ankyrin repeat-containing protein, putative [Ricinus communis]
6 Hb_002548_010 0.0929501083 - - hypothetical protein EUGRSUZ_L00530 [Eucalyptus grandis]
7 Hb_014361_140 0.1001334065 - - PREDICTED: peroxidase 51 [Jatropha curcas]
8 Hb_011429_010 0.1073377173 - - hypothetical protein POPTR_0188s00230g [Populus trichocarpa]
9 Hb_128460_020 0.1150135141 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 isoform X1 [Nicotiana tomentosiformis]
10 Hb_011671_360 0.1169790897 - - Hyoscyamine 6-dioxygenase, putative [Ricinus communis]
11 Hb_003602_080 0.1195121039 - - hypothetical protein POPTR_0002s10890g [Populus trichocarpa]
12 Hb_010369_010 0.1222249667 - - conserved hypothetical protein [Ricinus communis]
13 Hb_104855_010 0.1254779327 - - -
14 Hb_000061_060 0.1284303772 transcription factor TF Family: MYB-related transcription factor MYB28 [Arabidopsis thaliana]
15 Hb_098175_010 0.130026029 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
16 Hb_009697_010 0.1309499062 - - conserved hypothetical protein [Ricinus communis]
17 Hb_158110_010 0.1342599177 - - hypothetical protein CICLE_v10012017mg [Citrus clementina]
18 Hb_002422_010 0.1362334845 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
19 Hb_000021_010 0.1367666486 - - conserved hypothetical protein [Ricinus communis]
20 Hb_053935_010 0.1388863859 - - hypothetical protein EUGRSUZ_G02294 [Eucalyptus grandis]

Gene co-expression network

sample Hb_000203_090 Hb_000203_090 Hb_039410_010 Hb_039410_010 Hb_000203_090--Hb_039410_010 Hb_000167_090 Hb_000167_090 Hb_000203_090--Hb_000167_090 Hb_182625_010 Hb_182625_010 Hb_000203_090--Hb_182625_010 Hb_000769_030 Hb_000769_030 Hb_000203_090--Hb_000769_030 Hb_002548_010 Hb_002548_010 Hb_000203_090--Hb_002548_010 Hb_014361_140 Hb_014361_140 Hb_000203_090--Hb_014361_140 Hb_039410_010--Hb_000167_090 Hb_165552_020 Hb_165552_020 Hb_039410_010--Hb_165552_020 Hb_005040_010 Hb_005040_010 Hb_039410_010--Hb_005040_010 Hb_001957_050 Hb_001957_050 Hb_039410_010--Hb_001957_050 Hb_003602_080 Hb_003602_080 Hb_039410_010--Hb_003602_080 Hb_000167_090--Hb_002548_010 Hb_002422_010 Hb_002422_010 Hb_000167_090--Hb_002422_010 Hb_001104_250 Hb_001104_250 Hb_000167_090--Hb_001104_250 Hb_000769_050 Hb_000769_050 Hb_000167_090--Hb_000769_050 Hb_011671_360 Hb_011671_360 Hb_182625_010--Hb_011671_360 Hb_104855_010 Hb_104855_010 Hb_182625_010--Hb_104855_010 Hb_182625_010--Hb_014361_140 Hb_003073_060 Hb_003073_060 Hb_182625_010--Hb_003073_060 Hb_000152_090 Hb_000152_090 Hb_182625_010--Hb_000152_090 Hb_011429_010 Hb_011429_010 Hb_000769_030--Hb_011429_010 Hb_128460_020 Hb_128460_020 Hb_000769_030--Hb_128460_020 Hb_000769_030--Hb_014361_140 Hb_053935_010 Hb_053935_010 Hb_000769_030--Hb_053935_010 Hb_010369_010 Hb_010369_010 Hb_000769_030--Hb_010369_010 Hb_004724_290 Hb_004724_290 Hb_000769_030--Hb_004724_290 Hb_002548_010--Hb_001104_250 Hb_002548_010--Hb_000769_050 Hb_002548_010--Hb_000152_090 Hb_002548_010--Hb_182625_010 Hb_014361_140--Hb_128460_020 Hb_000061_060 Hb_000061_060 Hb_014361_140--Hb_000061_060 Hb_014361_140--Hb_053935_010 Hb_014361_140--Hb_104855_010 Hb_158110_010 Hb_158110_010 Hb_014361_140--Hb_158110_010 Hb_004241_190 Hb_004241_190 Hb_014361_140--Hb_004241_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.266767 0.072452 0.313637 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis