Hb_000203_140

Information

Type -
Description -
Location Contig203: 182101-182882
Sequence    

Annotation

kegg
ID pop:POPTR_0004s05630g
description POPTRDRAFT_555672; peroxisomal targeting signal type 2 receptor family protein
nr
ID XP_012091777.1
description PREDICTED: peroxisome biogenesis protein 7 [Jatropha curcas]
swissprot
ID Q9XF57
description Peroxisome biogenesis protein 7 OS=Arabidopsis thaliana GN=PEX7 PE=1 SV=2
trembl
ID A0A067JNL8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21570 PE=4 SV=1
Gene Ontology
ID GO:0008152
description peroxisomal targeting signal type 2 partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20794: 181990-182232 , PASA_asmbl_20795: 182313-182743
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000203_140 0.0 - - PREDICTED: peroxisome biogenesis protein 7 [Jatropha curcas]
2 Hb_002131_030 0.139855104 - - PREDICTED: pyruvate kinase isozyme G, chloroplastic [Jatropha curcas]
3 Hb_000286_200 0.1780958111 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
4 Hb_001221_340 0.1841451022 - - hypothetical protein EUGRSUZ_B00102 [Eucalyptus grandis]
5 Hb_100886_010 0.1882466673 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
6 Hb_005227_040 0.1965886094 transcription factor TF Family: HB unnamed protein product [Vitis vinifera]
7 Hb_004897_010 0.1982172845 - - -
8 Hb_000072_200 0.2005333792 - - PREDICTED: myb-like protein X [Jatropha curcas]
9 Hb_010815_020 0.2011718895 - - unnamed protein product [Vitis vinifera]
10 Hb_000914_100 0.201671616 - - unknown [Glycine max]
11 Hb_012022_170 0.2067339685 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
12 Hb_000001_130 0.2070239134 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
13 Hb_000197_220 0.2086395434 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
14 Hb_002232_160 0.2094703964 - - Transaminase mtnE, putative [Ricinus communis]
15 Hb_000510_240 0.2097403107 desease resistance Gene Name: PRK ATP binding protein, putative [Ricinus communis]
16 Hb_094970_010 0.2117925689 - - PREDICTED: quinolinate synthase, chloroplastic [Jatropha curcas]
17 Hb_000122_210 0.215688447 - - -
18 Hb_001728_140 0.2162572596 - - -
19 Hb_003098_080 0.2164517112 - - -
20 Hb_000139_340 0.2166895153 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000203_140 Hb_000203_140 Hb_002131_030 Hb_002131_030 Hb_000203_140--Hb_002131_030 Hb_000286_200 Hb_000286_200 Hb_000203_140--Hb_000286_200 Hb_001221_340 Hb_001221_340 Hb_000203_140--Hb_001221_340 Hb_100886_010 Hb_100886_010 Hb_000203_140--Hb_100886_010 Hb_005227_040 Hb_005227_040 Hb_000203_140--Hb_005227_040 Hb_004897_010 Hb_004897_010 Hb_000203_140--Hb_004897_010 Hb_000197_220 Hb_000197_220 Hb_002131_030--Hb_000197_220 Hb_002131_030--Hb_100886_010 Hb_002338_050 Hb_002338_050 Hb_002131_030--Hb_002338_050 Hb_002131_030--Hb_001221_340 Hb_000510_240 Hb_000510_240 Hb_002131_030--Hb_000510_240 Hb_000286_200--Hb_000510_240 Hb_000227_070 Hb_000227_070 Hb_000286_200--Hb_000227_070 Hb_000012_410 Hb_000012_410 Hb_000286_200--Hb_000012_410 Hb_010815_020 Hb_010815_020 Hb_000286_200--Hb_010815_020 Hb_000286_060 Hb_000286_060 Hb_000286_200--Hb_000286_060 Hb_001452_210 Hb_001452_210 Hb_000286_200--Hb_001452_210 Hb_001221_340--Hb_001452_210 Hb_007973_010 Hb_007973_010 Hb_001221_340--Hb_007973_010 Hb_002908_060 Hb_002908_060 Hb_001221_340--Hb_002908_060 Hb_000053_060 Hb_000053_060 Hb_001221_340--Hb_000053_060 Hb_001953_080 Hb_001953_080 Hb_001221_340--Hb_001953_080 Hb_000465_070 Hb_000465_070 Hb_100886_010--Hb_000465_070 Hb_000035_480 Hb_000035_480 Hb_100886_010--Hb_000035_480 Hb_140627_010 Hb_140627_010 Hb_100886_010--Hb_140627_010 Hb_000072_200 Hb_000072_200 Hb_100886_010--Hb_000072_200 Hb_003020_260 Hb_003020_260 Hb_100886_010--Hb_003020_260 Hb_000457_290 Hb_000457_290 Hb_100886_010--Hb_000457_290 Hb_000001_130 Hb_000001_130 Hb_005227_040--Hb_000001_130 Hb_001604_150 Hb_001604_150 Hb_005227_040--Hb_001604_150 Hb_011609_090 Hb_011609_090 Hb_005227_040--Hb_011609_090 Hb_002235_100 Hb_002235_100 Hb_005227_040--Hb_002235_100 Hb_000920_130 Hb_000920_130 Hb_005227_040--Hb_000920_130 Hb_000035_350 Hb_000035_350 Hb_005227_040--Hb_000035_350 Hb_004897_010--Hb_010815_020 Hb_004897_010--Hb_000286_200 Hb_000649_140 Hb_000649_140 Hb_004897_010--Hb_000649_140 Hb_000031_260 Hb_000031_260 Hb_004897_010--Hb_000031_260 Hb_004897_010--Hb_000286_060 Hb_004897_010--Hb_001953_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.663277 0.625455 0.85096 1.16293 0.13491 0.965786
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.54952 3.33382 1.71484 5.21841 5.57518

CAGE analysis