Hb_000203_150

Information

Type -
Description -
Location Contig203: 187474-188019
Sequence    

Annotation

kegg
ID pop:POPTR_0011s07340g
description POPTRDRAFT_235320; hypothetical protein
nr
ID XP_011011485.1
description PREDICTED: uncharacterized protein LOC105116038 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9I1L4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s07340g PE=4 SV=2
Gene Ontology
ID GO:0009507
description probable phosphatidylinositol 4-phosphate 5-kinase mss4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20796: 187279-187797
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000203_150 0.0 - - PREDICTED: uncharacterized protein LOC105116038 [Populus euphratica]
2 Hb_001013_060 0.0673441088 - - -
3 Hb_001610_060 0.0798226831 - - hypothetical protein TRIUR3_12067 [Triticum urartu]
4 Hb_000002_230 0.095785967 - - RING/U-box superfamily protein [Theobroma cacao]
5 Hb_000032_340 0.1041519143 - - PREDICTED: uncharacterized protein LOC105645669 [Jatropha curcas]
6 Hb_000720_060 0.1184862345 - - PREDICTED: BON1-associated protein 2-like [Jatropha curcas]
7 Hb_183209_020 0.1196653443 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X2 [Jatropha curcas]
8 Hb_000856_250 0.1214012238 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
9 Hb_012553_030 0.128218069 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
10 Hb_010417_090 0.1363132149 - - PREDICTED: protein LURP-one-related 17 [Jatropha curcas]
11 Hb_000563_570 0.1365829154 - - hypothetical protein JCGZ_18895 [Jatropha curcas]
12 Hb_016120_020 0.1377551678 - - PREDICTED: tetrahydrocannabinolic acid synthase-like [Jatropha curcas]
13 Hb_001775_060 0.1377789965 - - conserved hypothetical protein [Ricinus communis]
14 Hb_103541_010 0.1415364094 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X2 [Jatropha curcas]
15 Hb_106728_020 0.1467666077 - - cytochrome P450, putative [Ricinus communis]
16 Hb_015884_010 0.1472197832 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X1 [Jatropha curcas]
17 Hb_013691_040 0.1476865244 - - hypothetical protein B456_001G045900 [Gossypium raimondii]
18 Hb_000069_630 0.1477012496 - - hypothetical protein [Hevea brasiliensis]
19 Hb_000840_220 0.1526276063 - - PREDICTED: RING-H2 finger protein ATL78-like [Jatropha curcas]
20 Hb_179118_010 0.1526631478 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000203_150 Hb_000203_150 Hb_001013_060 Hb_001013_060 Hb_000203_150--Hb_001013_060 Hb_001610_060 Hb_001610_060 Hb_000203_150--Hb_001610_060 Hb_000002_230 Hb_000002_230 Hb_000203_150--Hb_000002_230 Hb_000032_340 Hb_000032_340 Hb_000203_150--Hb_000032_340 Hb_000720_060 Hb_000720_060 Hb_000203_150--Hb_000720_060 Hb_183209_020 Hb_183209_020 Hb_000203_150--Hb_183209_020 Hb_001013_060--Hb_001610_060 Hb_000840_220 Hb_000840_220 Hb_001013_060--Hb_000840_220 Hb_000563_570 Hb_000563_570 Hb_001013_060--Hb_000563_570 Hb_001013_060--Hb_000720_060 Hb_003582_010 Hb_003582_010 Hb_001013_060--Hb_003582_010 Hb_001610_060--Hb_000720_060 Hb_016120_020 Hb_016120_020 Hb_001610_060--Hb_016120_020 Hb_001610_060--Hb_000032_340 Hb_000856_250 Hb_000856_250 Hb_001610_060--Hb_000856_250 Hb_002894_040 Hb_002894_040 Hb_000002_230--Hb_002894_040 Hb_179118_010 Hb_179118_010 Hb_000002_230--Hb_179118_010 Hb_000002_230--Hb_183209_020 Hb_004590_010 Hb_004590_010 Hb_000002_230--Hb_004590_010 Hb_183820_010 Hb_183820_010 Hb_000002_230--Hb_183820_010 Hb_000032_340--Hb_000856_250 Hb_000069_520 Hb_000069_520 Hb_000032_340--Hb_000069_520 Hb_010417_090 Hb_010417_090 Hb_000032_340--Hb_010417_090 Hb_000032_340--Hb_183209_020 Hb_000069_630 Hb_000069_630 Hb_000720_060--Hb_000069_630 Hb_001775_060 Hb_001775_060 Hb_000720_060--Hb_001775_060 Hb_000720_060--Hb_016120_020 Hb_050898_010 Hb_050898_010 Hb_183209_020--Hb_050898_010 Hb_103541_010 Hb_103541_010 Hb_183209_020--Hb_103541_010 Hb_189034_010 Hb_189034_010 Hb_183209_020--Hb_189034_010 Hb_000137_030 Hb_000137_030 Hb_183209_020--Hb_000137_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 12.4314 2.2107 28.9651 0.0470068 0.0894377
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 9.22367 1.91813

CAGE analysis