Hb_000203_160

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig203: 216760-217629
Sequence    

Annotation

kegg
ID pop:POPTR_0003s11850g
description POPTRDRAFT_554278; hypothetical protein
nr
ID XP_012091775.1
description PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
swissprot
ID Q9SYG2
description Trihelix transcription factor ASIL1 OS=Arabidopsis thaliana GN=ASIL1 PE=1 SV=1
trembl
ID A0A067JBF1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21568 PE=4 SV=1
Gene Ontology
ID GO:0003700
description trihelix transcription factor asil2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20797: 216629-217801 , PASA_asmbl_20798: 215509-216993 , PASA_asmbl_20799: 214917-216878
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000203_160 0.0 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
2 Hb_126643_020 0.0519003941 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
3 Hb_004837_040 0.0655337986 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
4 Hb_002685_010 0.0707228286 - - PREDICTED: VQ motif-containing protein 4 [Jatropha curcas]
5 Hb_004907_110 0.07564462 - - PREDICTED: BTB/POZ and MATH domain-containing protein 3 isoform X1 [Jatropha curcas]
6 Hb_000554_020 0.0779784269 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980-like [Jatropha curcas]
7 Hb_002496_030 0.0798469526 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Jatropha curcas]
8 Hb_002016_110 0.0798558132 - - transducin family protein [Populus trichocarpa]
9 Hb_002518_140 0.0821702671 - - hypothetical protein JCGZ_18870 [Jatropha curcas]
10 Hb_003464_060 0.0823821428 - - PREDICTED: F-box protein PP2-A15 [Jatropha curcas]
11 Hb_000805_020 0.082854054 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
12 Hb_000260_270 0.084053191 - - zinc finger protein, putative [Ricinus communis]
13 Hb_175338_030 0.0840561149 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
14 Hb_005357_030 0.0846816104 - - PREDICTED: pyruvate, phosphate dikinase regulatory protein 1, chloroplastic [Jatropha curcas]
15 Hb_031527_040 0.0847144058 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
16 Hb_006332_020 0.0848102959 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
17 Hb_000859_060 0.085148552 - - PREDICTED: uncharacterized protein LOC105641312 [Jatropha curcas]
18 Hb_002685_170 0.0870299154 - - hypothetical protein EUTSA_v10019281mg [Eutrema salsugineum]
19 Hb_000030_300 0.0872195278 - - Thioredoxin, putative [Ricinus communis]
20 Hb_007441_200 0.0875179976 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]

Gene co-expression network

sample Hb_000203_160 Hb_000203_160 Hb_126643_020 Hb_126643_020 Hb_000203_160--Hb_126643_020 Hb_004837_040 Hb_004837_040 Hb_000203_160--Hb_004837_040 Hb_002685_010 Hb_002685_010 Hb_000203_160--Hb_002685_010 Hb_004907_110 Hb_004907_110 Hb_000203_160--Hb_004907_110 Hb_000554_020 Hb_000554_020 Hb_000203_160--Hb_000554_020 Hb_002496_030 Hb_002496_030 Hb_000203_160--Hb_002496_030 Hb_126643_020--Hb_002685_010 Hb_002085_110 Hb_002085_110 Hb_126643_020--Hb_002085_110 Hb_002518_140 Hb_002518_140 Hb_126643_020--Hb_002518_140 Hb_005699_070 Hb_005699_070 Hb_126643_020--Hb_005699_070 Hb_004491_010 Hb_004491_010 Hb_126643_020--Hb_004491_010 Hb_000062_240 Hb_000062_240 Hb_004837_040--Hb_000062_240 Hb_000000_370 Hb_000000_370 Hb_004837_040--Hb_000000_370 Hb_004837_040--Hb_002496_030 Hb_000629_010 Hb_000629_010 Hb_004837_040--Hb_000629_010 Hb_175338_030 Hb_175338_030 Hb_004837_040--Hb_175338_030 Hb_002685_010--Hb_002085_110 Hb_000139_410 Hb_000139_410 Hb_002685_010--Hb_000139_410 Hb_000127_130 Hb_000127_130 Hb_002685_010--Hb_000127_130 Hb_002685_010--Hb_005699_070 Hb_000805_020 Hb_000805_020 Hb_004907_110--Hb_000805_020 Hb_007532_030 Hb_007532_030 Hb_004907_110--Hb_007532_030 Hb_008725_260 Hb_008725_260 Hb_004907_110--Hb_008725_260 Hb_031527_040 Hb_031527_040 Hb_004907_110--Hb_031527_040 Hb_000876_070 Hb_000876_070 Hb_004907_110--Hb_000876_070 Hb_002631_060 Hb_002631_060 Hb_004907_110--Hb_002631_060 Hb_000406_220 Hb_000406_220 Hb_000554_020--Hb_000406_220 Hb_006332_020 Hb_006332_020 Hb_000554_020--Hb_006332_020 Hb_000754_060 Hb_000754_060 Hb_000554_020--Hb_000754_060 Hb_001671_020 Hb_001671_020 Hb_000554_020--Hb_001671_020 Hb_028872_140 Hb_028872_140 Hb_000554_020--Hb_028872_140 Hb_000032_290 Hb_000032_290 Hb_000554_020--Hb_000032_290 Hb_000030_300 Hb_000030_300 Hb_002496_030--Hb_000030_300 Hb_000453_170 Hb_000453_170 Hb_002496_030--Hb_000453_170 Hb_001269_550 Hb_001269_550 Hb_002496_030--Hb_001269_550 Hb_007951_050 Hb_007951_050 Hb_002496_030--Hb_007951_050 Hb_000392_300 Hb_000392_300 Hb_002496_030--Hb_000392_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.3432 28.0769 9.17588 11.7599 27.5719 29.2225
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.0471 34.4733 40.8054 22.054 12.9874

CAGE analysis