Hb_000203_180

Information

Type -
Description -
Location Contig203: 241661-242203
Sequence    

Annotation

kegg
ID rcu:RCOM_1015400
description hypothetical protein
nr
ID XP_012091774.1
description PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Jatropha curcas]
swissprot
ID Q9S7R3
description Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana GN=LSH10 PE=1 SV=1
trembl
ID A0A067JBB2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21567 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20800: 233264-241751 , PASA_asmbl_20802: 242009-242328
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000203_180 0.0 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Jatropha curcas]
2 Hb_000116_480 0.1308797482 - - PREDICTED: MORC family CW-type zinc finger protein 3-like [Jatropha curcas]
3 Hb_000139_240 0.1441530944 - - PREDICTED: putative F-box protein At3g16210 [Jatropha curcas]
4 Hb_001655_070 0.1448551246 - - PREDICTED: chromatin structure-remodeling complex subunit RSC1 [Jatropha curcas]
5 Hb_006452_030 0.1458211424 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
6 Hb_001150_040 0.1461110466 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Solanum lycopersicum]
7 Hb_011472_040 0.1463136768 - - PREDICTED: clathrin light chain 3 [Jatropha curcas]
8 Hb_001279_140 0.1521704572 - - PREDICTED: cystinosin homolog [Jatropha curcas]
9 Hb_012052_060 0.1554744456 - - hypothetical protein POPTR_0018s10190g [Populus trichocarpa]
10 Hb_005324_010 0.1569259975 - - Chaperone protein dnaJ, putative [Ricinus communis]
11 Hb_002263_010 0.1577612276 - - hypothetical protein CICLE_v10012259mg [Citrus clementina]
12 Hb_001472_120 0.1614831145 - - -
13 Hb_004225_180 0.1634182195 - - bel1 homeotic protein, putative [Ricinus communis]
14 Hb_005306_130 0.1650873054 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
15 Hb_004221_010 0.1668088215 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
16 Hb_000500_090 0.1668983384 - - nucleoside diphosphate kinase 2 [Hevea brasiliensis]
17 Hb_001184_100 0.1670964672 - - PREDICTED: zinc finger protein 4-like [Populus euphratica]
18 Hb_009158_030 0.1680907372 transcription factor TF Family: HB homeobox leucine zipper family protein [Populus trichocarpa]
19 Hb_000421_210 0.1681929775 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002400_070 0.1692818205 transcription factor TF Family: AUX/IAA PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140 [Jatropha curcas]

Gene co-expression network

sample Hb_000203_180 Hb_000203_180 Hb_000116_480 Hb_000116_480 Hb_000203_180--Hb_000116_480 Hb_000139_240 Hb_000139_240 Hb_000203_180--Hb_000139_240 Hb_001655_070 Hb_001655_070 Hb_000203_180--Hb_001655_070 Hb_006452_030 Hb_006452_030 Hb_000203_180--Hb_006452_030 Hb_001150_040 Hb_001150_040 Hb_000203_180--Hb_001150_040 Hb_011472_040 Hb_011472_040 Hb_000203_180--Hb_011472_040 Hb_082609_020 Hb_082609_020 Hb_000116_480--Hb_082609_020 Hb_000179_130 Hb_000179_130 Hb_000116_480--Hb_000179_130 Hb_000116_480--Hb_001655_070 Hb_009838_100 Hb_009838_100 Hb_000116_480--Hb_009838_100 Hb_000418_100 Hb_000418_100 Hb_000116_480--Hb_000418_100 Hb_005324_010 Hb_005324_010 Hb_000116_480--Hb_005324_010 Hb_000209_020 Hb_000209_020 Hb_000139_240--Hb_000209_020 Hb_000139_240--Hb_005324_010 Hb_005306_130 Hb_005306_130 Hb_000139_240--Hb_005306_130 Hb_002270_010 Hb_002270_010 Hb_000139_240--Hb_002270_010 Hb_000011_080 Hb_000011_080 Hb_000139_240--Hb_000011_080 Hb_004734_060 Hb_004734_060 Hb_000139_240--Hb_004734_060 Hb_004055_010 Hb_004055_010 Hb_001655_070--Hb_004055_010 Hb_000059_210 Hb_000059_210 Hb_001655_070--Hb_000059_210 Hb_008959_030 Hb_008959_030 Hb_001655_070--Hb_008959_030 Hb_002400_070 Hb_002400_070 Hb_001655_070--Hb_002400_070 Hb_004221_010 Hb_004221_010 Hb_001655_070--Hb_004221_010 Hb_015941_030 Hb_015941_030 Hb_001655_070--Hb_015941_030 Hb_002263_010 Hb_002263_010 Hb_006452_030--Hb_002263_010 Hb_030312_040 Hb_030312_040 Hb_006452_030--Hb_030312_040 Hb_006452_030--Hb_004221_010 Hb_003494_240 Hb_003494_240 Hb_006452_030--Hb_003494_240 Hb_006452_030--Hb_005324_010 Hb_001047_020 Hb_001047_020 Hb_006452_030--Hb_001047_020 Hb_004738_020 Hb_004738_020 Hb_001150_040--Hb_004738_020 Hb_028872_060 Hb_028872_060 Hb_001150_040--Hb_028872_060 Hb_004225_180 Hb_004225_180 Hb_001150_040--Hb_004225_180 Hb_000640_300 Hb_000640_300 Hb_001150_040--Hb_000640_300 Hb_012052_060 Hb_012052_060 Hb_001150_040--Hb_012052_060 Hb_084934_010 Hb_084934_010 Hb_011472_040--Hb_084934_010 Hb_006189_010 Hb_006189_010 Hb_011472_040--Hb_006189_010 Hb_001975_070 Hb_001975_070 Hb_011472_040--Hb_001975_070 Hb_011472_040--Hb_030312_040 Hb_011472_040--Hb_001655_070 Hb_011472_040--Hb_012052_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
233.998 138.244 2.52873 88.6425 131.743 308.641
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
280.678 153.28 158.21 222.152 1.05418

CAGE analysis