Hb_000203_200

Information

Type -
Description -
Location Contig203: 255237-256132
Sequence    

Annotation

kegg
ID rcu:RCOM_1015140
description Pollen allergen Che a 1 precursor, putative
nr
ID XP_002522577.1
description Pollen allergen Che a 1 precursor, putative [Ricinus communis]
swissprot
ID O49813
description Olee1-like protein OS=Betula pendula PE=2 SV=1
trembl
ID B9S9A8
description Pollen allergen Che a 1, putative OS=Ricinus communis GN=RCOM_1015140 PE=4 SV=1
Gene Ontology
ID GO:0005576
description olee1-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20803: 257061-257257
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000203_200 0.0 - - Pollen allergen Che a 1 precursor, putative [Ricinus communis]
2 Hb_000923_100 0.1379201672 - - chloride channel clc, putative [Ricinus communis]
3 Hb_000922_320 0.1449268377 - - hypothetical protein B456_001G071400 [Gossypium raimondii]
4 Hb_000327_200 0.148540087 - - glutathione-s-transferase omega, putative [Ricinus communis]
5 Hb_002281_010 0.1504908741 - - hypothetical protein POPTR_0001s47550g [Populus trichocarpa]
6 Hb_000979_140 0.1506333704 - - kinase family protein [Populus trichocarpa]
7 Hb_004052_110 0.1555807162 - - PREDICTED: host cell factor 2 isoform X1 [Jatropha curcas]
8 Hb_000334_050 0.1572342254 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
9 Hb_007416_260 0.1576608064 - - PREDICTED: E3 ubiquitin-protein ligase RNF12-A-like [Jatropha curcas]
10 Hb_012762_040 0.1608499505 - - big map kinase/bmk, putative [Ricinus communis]
11 Hb_000069_360 0.1611486388 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000853_330 0.1618928616 - - PREDICTED: importin subunit alpha-like [Jatropha curcas]
13 Hb_001247_210 0.1631029334 - - conserved hypothetical protein [Ricinus communis]
14 Hb_027445_100 0.1648950166 - - PREDICTED: probable monodehydroascorbate reductase, cytoplasmic isoform 2 [Jatropha curcas]
15 Hb_121089_020 0.1703436269 - - PREDICTED: UDP-glucose 4-epimerase GEPI48 [Jatropha curcas]
16 Hb_002325_060 0.1705079158 - - PREDICTED: ADP-ribosylation factor-like protein 8B-like [Glycine max]
17 Hb_001386_020 0.1706924494 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001103_060 0.1707053813 - - proton-dependent oligopeptide transport family protein [Populus trichocarpa]
19 Hb_001059_060 0.1707463679 - - PREDICTED: bifunctional riboflavin kinase/FMN phosphatase [Jatropha curcas]
20 Hb_029253_010 0.1711578119 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000203_200 Hb_000203_200 Hb_000923_100 Hb_000923_100 Hb_000203_200--Hb_000923_100 Hb_000922_320 Hb_000922_320 Hb_000203_200--Hb_000922_320 Hb_000327_200 Hb_000327_200 Hb_000203_200--Hb_000327_200 Hb_002281_010 Hb_002281_010 Hb_000203_200--Hb_002281_010 Hb_000979_140 Hb_000979_140 Hb_000203_200--Hb_000979_140 Hb_004052_110 Hb_004052_110 Hb_000203_200--Hb_004052_110 Hb_009862_020 Hb_009862_020 Hb_000923_100--Hb_009862_020 Hb_000077_160 Hb_000077_160 Hb_000923_100--Hb_000077_160 Hb_002835_280 Hb_002835_280 Hb_000923_100--Hb_002835_280 Hb_000336_180 Hb_000336_180 Hb_000923_100--Hb_000336_180 Hb_121089_020 Hb_121089_020 Hb_000923_100--Hb_121089_020 Hb_029253_010 Hb_029253_010 Hb_000922_320--Hb_029253_010 Hb_000000_480 Hb_000000_480 Hb_000922_320--Hb_000000_480 Hb_002235_060 Hb_002235_060 Hb_000922_320--Hb_002235_060 Hb_002325_060 Hb_002325_060 Hb_000922_320--Hb_002325_060 Hb_000757_130 Hb_000757_130 Hb_000922_320--Hb_000757_130 Hb_012762_040 Hb_012762_040 Hb_000922_320--Hb_012762_040 Hb_000069_360 Hb_000069_360 Hb_000327_200--Hb_000069_360 Hb_000310_060 Hb_000310_060 Hb_000327_200--Hb_000310_060 Hb_000996_080 Hb_000996_080 Hb_000327_200--Hb_000996_080 Hb_003020_250 Hb_003020_250 Hb_000327_200--Hb_003020_250 Hb_001587_040 Hb_001587_040 Hb_000327_200--Hb_001587_040 Hb_000334_050 Hb_000334_050 Hb_000327_200--Hb_000334_050 Hb_000915_130 Hb_000915_130 Hb_002281_010--Hb_000915_130 Hb_002281_010--Hb_012762_040 Hb_005332_140 Hb_005332_140 Hb_002281_010--Hb_005332_140 Hb_002281_010--Hb_000000_480 Hb_002281_010--Hb_002325_060 Hb_011671_340 Hb_011671_340 Hb_002281_010--Hb_011671_340 Hb_001729_020 Hb_001729_020 Hb_000979_140--Hb_001729_020 Hb_000452_030 Hb_000452_030 Hb_000979_140--Hb_000452_030 Hb_000979_140--Hb_004052_110 Hb_000015_090 Hb_000015_090 Hb_000979_140--Hb_000015_090 Hb_000197_180 Hb_000197_180 Hb_000979_140--Hb_000197_180 Hb_007416_260 Hb_007416_260 Hb_000979_140--Hb_007416_260 Hb_002259_220 Hb_002259_220 Hb_004052_110--Hb_002259_220 Hb_001059_060 Hb_001059_060 Hb_004052_110--Hb_001059_060 Hb_001998_210 Hb_001998_210 Hb_004052_110--Hb_001998_210 Hb_001865_100 Hb_001865_100 Hb_004052_110--Hb_001865_100 Hb_011188_010 Hb_011188_010 Hb_004052_110--Hb_011188_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0441297 1.38149 1.97606 1.36581 0.168782 0.343784
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.512503 0.483329 0.140677 0.297497 1.40075

CAGE analysis