Hb_000203_260

Information

Type -
Description -
Location Contig203: 294642-307458
Sequence    

Annotation

kegg
ID pop:POPTR_0006s03740g
description POPTRDRAFT_865412; hypothetical protein
nr
ID XP_012082560.1
description PREDICTED: microtubule-associated protein 70-2-like [Jatropha curcas]
swissprot
ID Q9C9X0
description Microtubule-associated protein 70-1 OS=Arabidopsis thaliana GN=MAP70.1 PE=1 SV=1
trembl
ID B9H927
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s03740g PE=4 SV=2
Gene Ontology
ID GO:0008017
description microtubule-associated protein 70-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20809: 289621-322287
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000203_260 0.0 - - PREDICTED: microtubule-associated protein 70-2-like [Jatropha curcas]
2 Hb_003747_020 0.1087419775 - - PREDICTED: acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X1 [Jatropha curcas]
3 Hb_003994_150 0.1194815737 - - PREDICTED: pyrophosphate-energized membrane proton pump 2 [Jatropha curcas]
4 Hb_005147_030 0.1306567862 - - hypothetical protein POPTR_0004s23390g [Populus trichocarpa]
5 Hb_002169_050 0.1321908502 - - PREDICTED: inositol 1,3,4-trisphosphate 5/6-kinase 4 [Jatropha curcas]
6 Hb_000366_200 0.1335167695 - - PREDICTED: dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase [Jatropha curcas]
7 Hb_002748_020 0.134071997 - - transducin family protein [Populus trichocarpa]
8 Hb_000483_310 0.1344227269 - - PREDICTED: WD-40 repeat-containing protein MSI4-like [Jatropha curcas]
9 Hb_002044_150 0.1345506256 - - PREDICTED: A/G-specific adenine DNA glycosylase isoform X1 [Jatropha curcas]
10 Hb_000327_160 0.1349365125 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
11 Hb_000207_050 0.1358667874 - - PREDICTED: uncharacterized protein LOC105634369 isoform X1 [Jatropha curcas]
12 Hb_002028_150 0.1362487978 - - PREDICTED: hepatocyte growth factor-regulated tyrosine kinase substrate [Jatropha curcas]
13 Hb_010174_040 0.1380388591 - - PREDICTED: T-complex protein 1 subunit epsilon [Jatropha curcas]
14 Hb_001473_180 0.1381760883 - - glutathione reductase [Hevea brasiliensis]
15 Hb_000352_340 0.1400460787 - - PREDICTED: importin-13 [Jatropha curcas]
16 Hb_015175_020 0.1409014478 - - hypothetical protein JCGZ_14452 [Jatropha curcas]
17 Hb_019053_030 0.1412582241 - - PREDICTED: sulfite oxidase [Jatropha curcas]
18 Hb_002053_150 0.1430362978 - - PREDICTED: small nuclear ribonucleoprotein-associated protein B' [Jatropha curcas]
19 Hb_001105_020 0.1431311258 - - expressed protein, putative [Ricinus communis]
20 Hb_000066_170 0.1454975135 - - PREDICTED: phosphatidylinositol-3-phosphatase myotubularin-1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000203_260 Hb_000203_260 Hb_003747_020 Hb_003747_020 Hb_000203_260--Hb_003747_020 Hb_003994_150 Hb_003994_150 Hb_000203_260--Hb_003994_150 Hb_005147_030 Hb_005147_030 Hb_000203_260--Hb_005147_030 Hb_002169_050 Hb_002169_050 Hb_000203_260--Hb_002169_050 Hb_000366_200 Hb_000366_200 Hb_000203_260--Hb_000366_200 Hb_002748_020 Hb_002748_020 Hb_000203_260--Hb_002748_020 Hb_003747_020--Hb_003994_150 Hb_000872_010 Hb_000872_010 Hb_003747_020--Hb_000872_010 Hb_019053_030 Hb_019053_030 Hb_003747_020--Hb_019053_030 Hb_003747_020--Hb_005147_030 Hb_001105_020 Hb_001105_020 Hb_003747_020--Hb_001105_020 Hb_002968_080 Hb_002968_080 Hb_003747_020--Hb_002968_080 Hb_002044_150 Hb_002044_150 Hb_003994_150--Hb_002044_150 Hb_003994_150--Hb_000872_010 Hb_000069_210 Hb_000069_210 Hb_003994_150--Hb_000069_210 Hb_001876_010 Hb_001876_010 Hb_003994_150--Hb_001876_010 Hb_000072_320 Hb_000072_320 Hb_003994_150--Hb_000072_320 Hb_002471_290 Hb_002471_290 Hb_005147_030--Hb_002471_290 Hb_001473_180 Hb_001473_180 Hb_005147_030--Hb_001473_180 Hb_002600_150 Hb_002600_150 Hb_005147_030--Hb_002600_150 Hb_009079_030 Hb_009079_030 Hb_005147_030--Hb_009079_030 Hb_000329_060 Hb_000329_060 Hb_005147_030--Hb_000329_060 Hb_005147_030--Hb_002044_150 Hb_002026_150 Hb_002026_150 Hb_002169_050--Hb_002026_150 Hb_002909_140 Hb_002909_140 Hb_002169_050--Hb_002909_140 Hb_000614_240 Hb_000614_240 Hb_002169_050--Hb_000614_240 Hb_012498_010 Hb_012498_010 Hb_002169_050--Hb_012498_010 Hb_000011_060 Hb_000011_060 Hb_002169_050--Hb_000011_060 Hb_010142_020 Hb_010142_020 Hb_002169_050--Hb_010142_020 Hb_000366_200--Hb_002026_150 Hb_000031_110 Hb_000031_110 Hb_000366_200--Hb_000031_110 Hb_000352_300 Hb_000352_300 Hb_000366_200--Hb_000352_300 Hb_000366_200--Hb_002169_050 Hb_010174_040 Hb_010174_040 Hb_000366_200--Hb_010174_040 Hb_000366_200--Hb_002909_140 Hb_001629_030 Hb_001629_030 Hb_002748_020--Hb_001629_030 Hb_000019_200 Hb_000019_200 Hb_002748_020--Hb_000019_200 Hb_005601_040 Hb_005601_040 Hb_002748_020--Hb_005601_040 Hb_000095_080 Hb_000095_080 Hb_002748_020--Hb_000095_080 Hb_000656_010 Hb_000656_010 Hb_002748_020--Hb_000656_010 Hb_006275_070 Hb_006275_070 Hb_002748_020--Hb_006275_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.8144 1.54368 4.54212 3.24118 3.79478 4.96873
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.07318 2.37227 7.71701 10.0349 4.70728

CAGE analysis