Hb_000204_120

Information

Type -
Description -
Location Contig204: 149533-177185
Sequence    

Annotation

kegg
ID rcu:RCOM_0804300
description hypothetical protein
nr
ID XP_012078609.1
description PREDICTED: uncharacterized protein LOC105639239 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RS87
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0804300 PE=4 SV=1
Gene Ontology
ID GO:0016874
description embryo defective 2410 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20899: 149548-160926 , PASA_asmbl_20900: 161038-161454 , PASA_asmbl_20902: 161604-175294 , PASA_asmbl_20903: 166971-167287 , PASA_asmbl_20905: 176062-176863 , PASA_asmbl_20906: 176190-177007
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000204_120 0.0 - - PREDICTED: uncharacterized protein LOC105639239 [Jatropha curcas]
2 Hb_005736_020 0.0644044992 - - hypothetical protein POPTR_0005s20940g [Populus trichocarpa]
3 Hb_002686_090 0.0692407027 - - PREDICTED: pentatricopeptide repeat-containing protein At4g13650 [Jatropha curcas]
4 Hb_011671_410 0.0709936539 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
5 Hb_001865_070 0.0801128638 - - PREDICTED: uncharacterized protein LOC105647937 isoform X1 [Jatropha curcas]
6 Hb_000388_090 0.0844130026 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
7 Hb_000672_040 0.0847592889 - - PREDICTED: ENHANCER OF AG-4 protein 2 [Jatropha curcas]
8 Hb_001157_240 0.0849390304 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
9 Hb_000365_240 0.0880889801 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33A-like [Jatropha curcas]
10 Hb_005686_090 0.0890293421 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X1 [Jatropha curcas]
11 Hb_000482_040 0.089294051 - - Protein YME1, putative [Ricinus communis]
12 Hb_000170_130 0.0894243512 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH2 [Jatropha curcas]
13 Hb_012506_040 0.0903559709 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105637346 [Jatropha curcas]
14 Hb_000366_040 0.0917764093 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
15 Hb_005582_040 0.0925571526 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
16 Hb_001242_130 0.0929363107 - - PREDICTED: U3 small nucleolar RNA-associated protein 4-like [Jatropha curcas]
17 Hb_001163_060 0.0930089654 - - neutral/alkaline invertase [Manihot esculenta]
18 Hb_001951_220 0.0939084426 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X5 [Jatropha curcas]
19 Hb_002768_060 0.094302484 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X1 [Jatropha curcas]
20 Hb_007820_010 0.0944188055 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: protein FLOWERING LOCUS D [Jatropha curcas]

Gene co-expression network

sample Hb_000204_120 Hb_000204_120 Hb_005736_020 Hb_005736_020 Hb_000204_120--Hb_005736_020 Hb_002686_090 Hb_002686_090 Hb_000204_120--Hb_002686_090 Hb_011671_410 Hb_011671_410 Hb_000204_120--Hb_011671_410 Hb_001865_070 Hb_001865_070 Hb_000204_120--Hb_001865_070 Hb_000388_090 Hb_000388_090 Hb_000204_120--Hb_000388_090 Hb_000672_040 Hb_000672_040 Hb_000204_120--Hb_000672_040 Hb_005686_090 Hb_005686_090 Hb_005736_020--Hb_005686_090 Hb_001157_240 Hb_001157_240 Hb_005736_020--Hb_001157_240 Hb_001999_290 Hb_001999_290 Hb_005736_020--Hb_001999_290 Hb_001004_060 Hb_001004_060 Hb_005736_020--Hb_001004_060 Hb_001008_120 Hb_001008_120 Hb_005736_020--Hb_001008_120 Hb_000640_040 Hb_000640_040 Hb_002686_090--Hb_000640_040 Hb_002686_090--Hb_001865_070 Hb_001716_040 Hb_001716_040 Hb_002686_090--Hb_001716_040 Hb_002542_110 Hb_002542_110 Hb_002686_090--Hb_002542_110 Hb_000170_130 Hb_000170_130 Hb_002686_090--Hb_000170_130 Hb_011671_410--Hb_000170_130 Hb_011671_410--Hb_005736_020 Hb_011671_410--Hb_000672_040 Hb_062226_070 Hb_062226_070 Hb_011671_410--Hb_062226_070 Hb_011671_410--Hb_001999_290 Hb_007441_160 Hb_007441_160 Hb_001865_070--Hb_007441_160 Hb_005977_070 Hb_005977_070 Hb_001865_070--Hb_005977_070 Hb_001865_070--Hb_000672_040 Hb_001865_070--Hb_005736_020 Hb_001865_070--Hb_001157_240 Hb_001357_020 Hb_001357_020 Hb_000388_090--Hb_001357_020 Hb_000388_090--Hb_005736_020 Hb_002063_020 Hb_002063_020 Hb_000388_090--Hb_002063_020 Hb_028912_050 Hb_028912_050 Hb_000388_090--Hb_028912_050 Hb_002099_080 Hb_002099_080 Hb_000388_090--Hb_002099_080 Hb_000028_390 Hb_000028_390 Hb_000388_090--Hb_000028_390 Hb_005186_040 Hb_005186_040 Hb_000672_040--Hb_005186_040 Hb_000672_040--Hb_007441_160 Hb_000672_040--Hb_005736_020 Hb_001227_080 Hb_001227_080 Hb_000672_040--Hb_001227_080 Hb_005486_030 Hb_005486_030 Hb_000672_040--Hb_005486_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.77447 13.9206 7.41777 10.5183 7.91301 13.9294
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.85714 10.8863 17.0321 13.1196 27.7454

CAGE analysis