Hb_000204_180

Information

Type -
Description -
Location Contig204: 275369-278397
Sequence    

Annotation

kegg
ID bvg:104886247
description uncharacterized LOC104886247
nr
ID XP_009599307.1
description PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID E5GBB7
description Gag protease polyprotein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000204_180 0.0 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
2 Hb_000227_110 0.0278192267 - - hypothetical protein CICLE_v10010500mg, partial [Citrus clementina]
3 Hb_002141_010 0.0395498916 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
4 Hb_128287_010 0.0413522153 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
5 Hb_108404_010 0.0600955867 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
6 Hb_079543_010 0.0680381198 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
7 Hb_000362_230 0.0832236938 - - UDP-glucosyltransferase, putative [Ricinus communis]
8 Hb_155911_010 0.095352502 - - hypothetical protein JCGZ_26951 [Jatropha curcas]
9 Hb_001142_020 0.101203935 - - -
10 Hb_002673_050 0.1084472961 - - -
11 Hb_091369_010 0.1104692364 - - -
12 Hb_008473_010 0.1114480941 - - PREDICTED: laccase-14-like [Jatropha curcas]
13 Hb_000944_010 0.1220749544 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
14 Hb_003400_030 0.122172714 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
15 Hb_002400_450 0.1268736485 - - PREDICTED: protein MEMO1 isoform X2 [Sesamum indicum]
16 Hb_000260_190 0.1293018208 - - -
17 Hb_034667_010 0.1334360185 - - -
18 Hb_008151_030 0.1398953564 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_010399_020 0.1437720453 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
20 Hb_013205_010 0.175875826 - - PREDICTED: putative B3 domain-containing protein At2g27410 [Jatropha curcas]

Gene co-expression network

sample Hb_000204_180 Hb_000204_180 Hb_000227_110 Hb_000227_110 Hb_000204_180--Hb_000227_110 Hb_002141_010 Hb_002141_010 Hb_000204_180--Hb_002141_010 Hb_128287_010 Hb_128287_010 Hb_000204_180--Hb_128287_010 Hb_108404_010 Hb_108404_010 Hb_000204_180--Hb_108404_010 Hb_079543_010 Hb_079543_010 Hb_000204_180--Hb_079543_010 Hb_000362_230 Hb_000362_230 Hb_000204_180--Hb_000362_230 Hb_000227_110--Hb_002141_010 Hb_000227_110--Hb_079543_010 Hb_000227_110--Hb_000362_230 Hb_155911_010 Hb_155911_010 Hb_000227_110--Hb_155911_010 Hb_000227_110--Hb_128287_010 Hb_002141_010--Hb_079543_010 Hb_002141_010--Hb_000362_230 Hb_002141_010--Hb_155911_010 Hb_001142_020 Hb_001142_020 Hb_002141_010--Hb_001142_020 Hb_128287_010--Hb_108404_010 Hb_002673_050 Hb_002673_050 Hb_128287_010--Hb_002673_050 Hb_091369_010 Hb_091369_010 Hb_128287_010--Hb_091369_010 Hb_008473_010 Hb_008473_010 Hb_128287_010--Hb_008473_010 Hb_108404_010--Hb_002673_050 Hb_108404_010--Hb_091369_010 Hb_108404_010--Hb_008473_010 Hb_000944_010 Hb_000944_010 Hb_108404_010--Hb_000944_010 Hb_079543_010--Hb_000362_230 Hb_079543_010--Hb_155911_010 Hb_079543_010--Hb_001142_020 Hb_000362_230--Hb_155911_010 Hb_000362_230--Hb_001142_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0211348 0.0110137
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis