Hb_000204_200

Information

Type -
Description -
Location Contig204: 294644-296638
Sequence    

Annotation

kegg
ID vvi:104879859
description serine/threonine-protein phosphatase 7 long form homolog
nr
ID CAN78664.1
description hypothetical protein VITISV_019818 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5B5G3
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019818 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000204_200 0.0 - - hypothetical protein VITISV_019818 [Vitis vinifera]
2 Hb_030630_010 0.0046985049 - - PREDICTED: uncharacterized protein LOC105786776 [Gossypium raimondii]
3 Hb_009474_010 0.0248792654 - - -
4 Hb_007768_030 0.0344061722 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_000661_190 0.0930883765 - - PREDICTED: protein spt2-like [Jatropha curcas]
6 Hb_000370_010 0.1098002174 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
7 Hb_000211_060 0.1489597712 - - glutathione peroxidase [Populus euphratica]
8 Hb_010626_020 0.2017015944 - - -
9 Hb_003177_120 0.2104448311 - - PREDICTED: disease resistance protein At4g27190-like [Populus euphratica]
10 Hb_021156_030 0.2447132925 - - hypothetical protein JCGZ_18422 [Jatropha curcas]
11 Hb_000453_220 0.3113360155 - - hypothetical protein JCGZ_11079 [Jatropha curcas]
12 Hb_000544_140 0.3190828951 - - PREDICTED: uncharacterized protein LOC101245866 [Solanum lycopersicum]
13 Hb_123521_010 0.3247648701 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
14 Hb_003446_040 0.3250062231 - - -
15 Hb_005483_010 0.3386143768 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit A [Jatropha curcas]
16 Hb_008147_010 0.3401960023 - - hypothetical protein, partial [Pseudomonas fluorescens]
17 Hb_021616_010 0.3416765791 - - -
18 Hb_021419_050 0.3548060344 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Malus domestica]
19 Hb_006355_050 0.3562963395 - - -
20 Hb_000038_190 0.3614039735 - - -

Gene co-expression network

sample Hb_000204_200 Hb_000204_200 Hb_030630_010 Hb_030630_010 Hb_000204_200--Hb_030630_010 Hb_009474_010 Hb_009474_010 Hb_000204_200--Hb_009474_010 Hb_007768_030 Hb_007768_030 Hb_000204_200--Hb_007768_030 Hb_000661_190 Hb_000661_190 Hb_000204_200--Hb_000661_190 Hb_000370_010 Hb_000370_010 Hb_000204_200--Hb_000370_010 Hb_000211_060 Hb_000211_060 Hb_000204_200--Hb_000211_060 Hb_030630_010--Hb_009474_010 Hb_030630_010--Hb_007768_030 Hb_030630_010--Hb_000661_190 Hb_030630_010--Hb_000370_010 Hb_030630_010--Hb_000211_060 Hb_009474_010--Hb_007768_030 Hb_009474_010--Hb_000661_190 Hb_009474_010--Hb_000211_060 Hb_009474_010--Hb_000370_010 Hb_007768_030--Hb_000661_190 Hb_007768_030--Hb_000211_060 Hb_007768_030--Hb_000370_010 Hb_000661_190--Hb_000211_060 Hb_021156_030 Hb_021156_030 Hb_000661_190--Hb_021156_030 Hb_010626_020 Hb_010626_020 Hb_000370_010--Hb_010626_020 Hb_000370_010--Hb_000661_190 Hb_000211_060--Hb_021156_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0181586
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0581473 0 0

CAGE analysis