Hb_000205_070

Information

Type -
Description -
Location Contig205: 116190-118130
Sequence    

Annotation

kegg
ID rcu:RCOM_0231520
description kinase, putative (EC:2.7.11.25)
nr
ID XP_002527233.1
description kinase, putative [Ricinus communis]
swissprot
ID Q9LXA5
description L-type lectin-domain containing receptor kinase IX.1 OS=Arabidopsis thaliana GN=LECRK91 PE=2 SV=1
trembl
ID B9SML4
description Kinase, putative OS=Ricinus communis GN=RCOM_0231520 PE=3 SV=1
Gene Ontology
ID GO:0005622
description l-type lectin-domain containing receptor kinase -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000205_070 0.0 - - kinase, putative [Ricinus communis]
2 Hb_027255_010 0.1506453437 transcription factor TF Family: Orphans conserved hypothetical protein [Ricinus communis]
3 Hb_003337_070 0.1561298214 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]
4 Hb_000176_060 0.1638980782 - - unnamed protein product [Vitis vinifera]
5 Hb_009189_030 0.1670763096 - - hypothetical protein PRUPE_ppa023969mg, partial [Prunus persica]
6 Hb_022452_010 0.171511938 - - -
7 Hb_006745_020 0.1747708012 - - PREDICTED: 22.0 kDa class IV heat shock protein [Jatropha curcas]
8 Hb_182807_020 0.1769979414 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
9 Hb_004631_160 0.17980532 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Jatropha curcas]
10 Hb_184326_010 0.1926605464 - - RecName: Full=Anthocyanidin 3-O-glucosyltransferase 1; AltName: Full=Flavonol 3-O-glucosyltransferase 1; AltName: Full=UDP-glucose flavonoid 3-O-glucosyltransferase 1 [Manihot esculenta]
11 Hb_003647_120 0.1952982379 - - 18.2 kDa class I heat shock family protein [Populus trichocarpa]
12 Hb_003816_020 0.1962801441 - - hypothetical protein POPTR_0017s05940g [Populus trichocarpa]
13 Hb_000853_290 0.1975834174 - - PREDICTED: uncharacterized protein LOC105642585 [Jatropha curcas]
14 Hb_114868_010 0.2063850819 - - -
15 Hb_004846_180 0.2067804643 - - heat shock protein, putative [Ricinus communis]
16 Hb_000853_300 0.2171147658 - - -
17 Hb_009686_010 0.2183805999 - - mitochondrial thioredoxin 2 [Hevea brasiliensis]
18 Hb_001279_230 0.2189508531 - - PREDICTED: class I heat shock protein-like [Jatropha curcas]
19 Hb_004939_020 0.224295568 - - gag/pol protein [Bryonia dioica]
20 Hb_001951_120 0.2249370334 - - -

Gene co-expression network

sample Hb_000205_070 Hb_000205_070 Hb_027255_010 Hb_027255_010 Hb_000205_070--Hb_027255_010 Hb_003337_070 Hb_003337_070 Hb_000205_070--Hb_003337_070 Hb_000176_060 Hb_000176_060 Hb_000205_070--Hb_000176_060 Hb_009189_030 Hb_009189_030 Hb_000205_070--Hb_009189_030 Hb_022452_010 Hb_022452_010 Hb_000205_070--Hb_022452_010 Hb_006745_020 Hb_006745_020 Hb_000205_070--Hb_006745_020 Hb_009686_010 Hb_009686_010 Hb_027255_010--Hb_009686_010 Hb_027255_010--Hb_009189_030 Hb_114868_010 Hb_114868_010 Hb_027255_010--Hb_114868_010 Hb_002326_060 Hb_002326_060 Hb_027255_010--Hb_002326_060 Hb_000853_290 Hb_000853_290 Hb_027255_010--Hb_000853_290 Hb_003337_070--Hb_006745_020 Hb_003647_120 Hb_003647_120 Hb_003337_070--Hb_003647_120 Hb_001279_230 Hb_001279_230 Hb_003337_070--Hb_001279_230 Hb_003337_070--Hb_009189_030 Hb_184326_010 Hb_184326_010 Hb_003337_070--Hb_184326_010 Hb_000176_060--Hb_022452_010 Hb_001276_010 Hb_001276_010 Hb_000176_060--Hb_001276_010 Hb_004631_160 Hb_004631_160 Hb_000176_060--Hb_004631_160 Hb_000176_060--Hb_002326_060 Hb_134732_010 Hb_134732_010 Hb_000176_060--Hb_134732_010 Hb_003222_010 Hb_003222_010 Hb_009189_030--Hb_003222_010 Hb_009189_030--Hb_000853_290 Hb_009189_030--Hb_004631_160 Hb_022452_010--Hb_001276_010 Hb_171659_010 Hb_171659_010 Hb_022452_010--Hb_171659_010 Hb_003816_020 Hb_003816_020 Hb_022452_010--Hb_003816_020 Hb_001951_120 Hb_001951_120 Hb_022452_010--Hb_001951_120 Hb_006745_020--Hb_000853_290 Hb_006745_020--Hb_184326_010 Hb_006745_020--Hb_003647_120 Hb_000398_130 Hb_000398_130 Hb_006745_020--Hb_000398_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.3163 30.8192 0.0232671 0.621595 81.8311 44.4705
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.583297 0.257012 0 1.6584 0.271336

CAGE analysis