Hb_000205_090

Information

Type -
Description -
Location Contig205: 143637-148449
Sequence    

Annotation

kegg
ID pop:POPTR_0019s03570g
description POPTRDRAFT_665301; hypothetical protein
nr
ID XP_002325337.2
description hypothetical protein POPTR_0019s03570g [Populus trichocarpa]
swissprot
ID Q6DRG1
description RNA-binding protein 42 OS=Danio rerio GN=rbm42 PE=2 SV=2
trembl
ID B9IPA5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s03570g PE=4 SV=2
Gene Ontology
ID GO:0000166
description rna-binding protein 42

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21099: 143722-148369 , PASA_asmbl_21100: 145450-145734
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000205_090 0.0 - - hypothetical protein POPTR_0019s03570g [Populus trichocarpa]
2 Hb_004109_170 0.0511350748 - - PREDICTED: probable ribokinase [Jatropha curcas]
3 Hb_010098_050 0.0584648665 - - PREDICTED: putative deoxyribonuclease tatdn3-A [Jatropha curcas]
4 Hb_118419_010 0.0600764546 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
5 Hb_000236_040 0.0656791398 - - PREDICTED: uncharacterized protein LOC105633150 isoform X1 [Jatropha curcas]
6 Hb_000656_240 0.0673902196 - - proteasome subunit alpha type, putative [Ricinus communis]
7 Hb_004116_190 0.0683563557 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
8 Hb_000827_050 0.0683638508 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
9 Hb_000336_150 0.0698267028 - - ribulose-5-phosphate-3-epimerase, putative [Ricinus communis]
10 Hb_003582_060 0.0698270208 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
11 Hb_004195_270 0.0699590127 - - Ubiquitin-conjugating enzyme 16 [Theobroma cacao]
12 Hb_006615_240 0.0702187569 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
13 Hb_003052_190 0.0710635939 - - PREDICTED: uncharacterized protein LOC105641937 isoform X2 [Jatropha curcas]
14 Hb_001633_050 0.0726350166 - - PREDICTED: histone H2A.Z-specific chaperone CHZ1 [Jatropha curcas]
15 Hb_000260_030 0.073694174 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
16 Hb_001902_140 0.0737686719 - - PREDICTED: uncharacterized protein LOC105648457 isoform X2 [Jatropha curcas]
17 Hb_000580_090 0.0747519951 - - PREDICTED: tRNA 2'-phosphotransferase 1 isoform X1 [Jatropha curcas]
18 Hb_011512_070 0.0749893303 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
19 Hb_021068_040 0.0750007471 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]
20 Hb_002226_060 0.0753299971 - - PREDICTED: uncharacterized protein LOC105641377 [Jatropha curcas]

Gene co-expression network

sample Hb_000205_090 Hb_000205_090 Hb_004109_170 Hb_004109_170 Hb_000205_090--Hb_004109_170 Hb_010098_050 Hb_010098_050 Hb_000205_090--Hb_010098_050 Hb_118419_010 Hb_118419_010 Hb_000205_090--Hb_118419_010 Hb_000236_040 Hb_000236_040 Hb_000205_090--Hb_000236_040 Hb_000656_240 Hb_000656_240 Hb_000205_090--Hb_000656_240 Hb_004116_190 Hb_004116_190 Hb_000205_090--Hb_004116_190 Hb_000580_090 Hb_000580_090 Hb_004109_170--Hb_000580_090 Hb_000260_030 Hb_000260_030 Hb_004109_170--Hb_000260_030 Hb_004109_170--Hb_118419_010 Hb_012286_030 Hb_012286_030 Hb_004109_170--Hb_012286_030 Hb_006615_240 Hb_006615_240 Hb_004109_170--Hb_006615_240 Hb_010098_050--Hb_006615_240 Hb_001341_150 Hb_001341_150 Hb_010098_050--Hb_001341_150 Hb_019280_050 Hb_019280_050 Hb_010098_050--Hb_019280_050 Hb_000431_170 Hb_000431_170 Hb_010098_050--Hb_000431_170 Hb_008013_050 Hb_008013_050 Hb_010098_050--Hb_008013_050 Hb_118419_010--Hb_000580_090 Hb_004195_270 Hb_004195_270 Hb_118419_010--Hb_004195_270 Hb_001105_030 Hb_001105_030 Hb_118419_010--Hb_001105_030 Hb_000815_320 Hb_000815_320 Hb_118419_010--Hb_000815_320 Hb_000827_050 Hb_000827_050 Hb_000236_040--Hb_000827_050 Hb_001633_050 Hb_001633_050 Hb_000236_040--Hb_001633_050 Hb_002014_020 Hb_002014_020 Hb_000236_040--Hb_002014_020 Hb_003304_020 Hb_003304_020 Hb_000236_040--Hb_003304_020 Hb_004058_030 Hb_004058_030 Hb_000236_040--Hb_004058_030 Hb_000656_240--Hb_004116_190 Hb_001504_110 Hb_001504_110 Hb_000656_240--Hb_001504_110 Hb_001195_480 Hb_001195_480 Hb_000656_240--Hb_001195_480 Hb_011512_070 Hb_011512_070 Hb_000656_240--Hb_011512_070 Hb_000656_240--Hb_000580_090 Hb_008554_060 Hb_008554_060 Hb_000656_240--Hb_008554_060 Hb_004116_190--Hb_001633_050 Hb_002995_020 Hb_002995_020 Hb_004116_190--Hb_002995_020 Hb_000020_060 Hb_000020_060 Hb_004116_190--Hb_000020_060 Hb_000676_180 Hb_000676_180 Hb_004116_190--Hb_000676_180 Hb_005846_040 Hb_005846_040 Hb_004116_190--Hb_005846_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.66 18.0828 32.9362 23.55 22.1278 19.6649
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.8805 50.7802 39.2391 24.828 22.9675

CAGE analysis