Hb_000205_100

Information

Type -
Description -
Location Contig205: 148517-172058
Sequence    

Annotation

kegg
ID rcu:RCOM_0609300
description protein with unknown function
nr
ID XP_012089331.1
description PREDICTED: exportin-4 [Jatropha curcas]
swissprot
ID Q9ESJ0
description Exportin-4 OS=Mus musculus GN=Xpo4 PE=2 SV=2
trembl
ID A0A067JUS4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23548 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21101: 148809-150495 , PASA_asmbl_21102: 150619-155670 , PASA_asmbl_21103: 159604-162131 , PASA_asmbl_21104: 162237-171581 , PASA_asmbl_21105: 171741-172068
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000205_100 0.0 - - PREDICTED: exportin-4 [Jatropha curcas]
2 Hb_000193_190 0.0409710556 - - PREDICTED: dnaJ homolog subfamily C member 16 [Jatropha curcas]
3 Hb_001946_010 0.0586577574 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
4 Hb_000225_040 0.0690222435 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]
5 Hb_000613_050 0.0690970715 - - PREDICTED: uncharacterized protein LOC105641544 isoform X2 [Jatropha curcas]
6 Hb_004689_050 0.0696980719 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001178_070 0.0734937658 - - PREDICTED: BTB/POZ domain-containing protein FBL11 [Jatropha curcas]
8 Hb_001579_320 0.0739525504 - - pyroglutamyl-peptidase I, putative [Ricinus communis]
9 Hb_000260_170 0.0743199344 - - PREDICTED: putative zinc transporter At3g08650 [Cucumis sativus]
10 Hb_000011_200 0.0749054781 - - PREDICTED: 26S protease regulatory subunit 7 isoform X1 [Jatropha curcas]
11 Hb_000023_220 0.0754690185 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 18 isoform X1 [Jatropha curcas]
12 Hb_003025_110 0.0772522995 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
13 Hb_007576_110 0.0784538267 - - Endoplasmic reticulum vesicle transporter protein [Theobroma cacao]
14 Hb_002213_070 0.0784816604 - - epsilon-adaptin family protein [Populus trichocarpa]
15 Hb_000853_350 0.0784826591 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like [Jatropha curcas]
16 Hb_003952_070 0.0792225581 - - ubiquitin-protein ligase, putative [Ricinus communis]
17 Hb_004954_070 0.0795973128 - - PREDICTED: uncharacterized protein LOC105645187 [Jatropha curcas]
18 Hb_103012_010 0.0799892744 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
19 Hb_000907_110 0.0800998391 - - dihydroxyacetone kinase family protein [Populus trichocarpa]
20 Hb_002716_130 0.0804818379 - - PREDICTED: uncharacterized protein LOC105645470 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000205_100 Hb_000205_100 Hb_000193_190 Hb_000193_190 Hb_000205_100--Hb_000193_190 Hb_001946_010 Hb_001946_010 Hb_000205_100--Hb_001946_010 Hb_000225_040 Hb_000225_040 Hb_000205_100--Hb_000225_040 Hb_000613_050 Hb_000613_050 Hb_000205_100--Hb_000613_050 Hb_004689_050 Hb_004689_050 Hb_000205_100--Hb_004689_050 Hb_001178_070 Hb_001178_070 Hb_000205_100--Hb_001178_070 Hb_000011_200 Hb_000011_200 Hb_000193_190--Hb_000011_200 Hb_000193_190--Hb_001946_010 Hb_000193_190--Hb_000225_040 Hb_007576_110 Hb_007576_110 Hb_000193_190--Hb_007576_110 Hb_011930_160 Hb_011930_160 Hb_000193_190--Hb_011930_160 Hb_103012_010 Hb_103012_010 Hb_001946_010--Hb_103012_010 Hb_000260_170 Hb_000260_170 Hb_001946_010--Hb_000260_170 Hb_001946_010--Hb_011930_160 Hb_003025_110 Hb_003025_110 Hb_001946_010--Hb_003025_110 Hb_000225_040--Hb_000011_200 Hb_003158_010 Hb_003158_010 Hb_000225_040--Hb_003158_010 Hb_167498_010 Hb_167498_010 Hb_000225_040--Hb_167498_010 Hb_010618_010 Hb_010618_010 Hb_000225_040--Hb_010618_010 Hb_000329_470 Hb_000329_470 Hb_000225_040--Hb_000329_470 Hb_001343_040 Hb_001343_040 Hb_000613_050--Hb_001343_040 Hb_000592_030 Hb_000592_030 Hb_000613_050--Hb_000592_030 Hb_000008_290 Hb_000008_290 Hb_000613_050--Hb_000008_290 Hb_002213_070 Hb_002213_070 Hb_000613_050--Hb_002213_070 Hb_001199_100 Hb_001199_100 Hb_000613_050--Hb_001199_100 Hb_002815_030 Hb_002815_030 Hb_000613_050--Hb_002815_030 Hb_004429_100 Hb_004429_100 Hb_004689_050--Hb_004429_100 Hb_033834_060 Hb_033834_060 Hb_004689_050--Hb_033834_060 Hb_004689_050--Hb_001946_010 Hb_000638_120 Hb_000638_120 Hb_004689_050--Hb_000638_120 Hb_100215_010 Hb_100215_010 Hb_004689_050--Hb_100215_010 Hb_009486_180 Hb_009486_180 Hb_001178_070--Hb_009486_180 Hb_000011_230 Hb_000011_230 Hb_001178_070--Hb_000011_230 Hb_001178_070--Hb_000613_050 Hb_004954_070 Hb_004954_070 Hb_001178_070--Hb_004954_070 Hb_000181_400 Hb_000181_400 Hb_001178_070--Hb_000181_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.80629 6.42865 3.5649 7.23071 9.99128 11.3833
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.71889 7.30339 6.10764 9.86482 5.95715

CAGE analysis