Hb_000205_120

Information

Type -
Description -
Location Contig205: 177936-184431
Sequence    

Annotation

kegg
ID rcu:RCOM_0609440
description casein kinase, putative
nr
ID XP_012089343.1
description PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
swissprot
ID P42158
description Casein kinase I isoform delta-like OS=Arabidopsis thaliana GN=At4g26100 PE=2 SV=2
trembl
ID B9S7L3
description Casein kinase, putative OS=Ricinus communis GN=RCOM_0609440 PE=4 SV=1
Gene Ontology
ID GO:0004674
description casein kinase i-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21107: 177782-184430 , PASA_asmbl_21108: 178055-183732
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000205_120 0.0 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
2 Hb_000529_080 0.0613808749 - - PREDICTED: uncharacterized protein LOC105641675 [Jatropha curcas]
3 Hb_000265_150 0.0710021977 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
4 Hb_004447_030 0.0729034485 - - PREDICTED: glucose-induced degradation protein 4 homolog [Jatropha curcas]
5 Hb_008887_050 0.0746576201 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
6 Hb_000976_270 0.0749108821 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
7 Hb_010968_010 0.0791132025 - - Golgi snare 12 isoform 1 [Theobroma cacao]
8 Hb_001663_110 0.0810809361 - - RNA binding protein, putative [Ricinus communis]
9 Hb_001504_150 0.0823245911 - - PREDICTED: DCN1-like protein 4 [Jatropha curcas]
10 Hb_143629_010 0.082451189 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
11 Hb_000347_080 0.0844031893 - - PREDICTED: 25.3 kDa vesicle transport protein [Jatropha curcas]
12 Hb_000236_280 0.0870526696 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
13 Hb_031939_010 0.0889825683 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
14 Hb_000676_050 0.0893801265 - - PREDICTED: thioredoxin domain-containing protein PLP3B-like [Gossypium raimondii]
15 Hb_000666_110 0.0903173472 - - PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
16 Hb_000141_060 0.0905464078 - - PREDICTED: uncharacterized protein LOC105632248 [Jatropha curcas]
17 Hb_002007_350 0.0915842302 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
18 Hb_002784_050 0.0928287553 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
19 Hb_000923_040 0.0936267152 - - PREDICTED: 15 kDa selenoprotein [Jatropha curcas]
20 Hb_019962_030 0.0942524271 - - PREDICTED: uncharacterized protein LOC105650622 [Jatropha curcas]

Gene co-expression network

sample Hb_000205_120 Hb_000205_120 Hb_000529_080 Hb_000529_080 Hb_000205_120--Hb_000529_080 Hb_000265_150 Hb_000265_150 Hb_000205_120--Hb_000265_150 Hb_004447_030 Hb_004447_030 Hb_000205_120--Hb_004447_030 Hb_008887_050 Hb_008887_050 Hb_000205_120--Hb_008887_050 Hb_000976_270 Hb_000976_270 Hb_000205_120--Hb_000976_270 Hb_010968_010 Hb_010968_010 Hb_000205_120--Hb_010968_010 Hb_000058_040 Hb_000058_040 Hb_000529_080--Hb_000058_040 Hb_000529_080--Hb_000265_150 Hb_000529_080--Hb_008887_050 Hb_000529_080--Hb_000976_270 Hb_031939_010 Hb_031939_010 Hb_000529_080--Hb_031939_010 Hb_012305_070 Hb_012305_070 Hb_000265_150--Hb_012305_070 Hb_004722_060 Hb_004722_060 Hb_000265_150--Hb_004722_060 Hb_000768_050 Hb_000768_050 Hb_000265_150--Hb_000768_050 Hb_008406_160 Hb_008406_160 Hb_000265_150--Hb_008406_160 Hb_001663_110 Hb_001663_110 Hb_004447_030--Hb_001663_110 Hb_004447_030--Hb_000976_270 Hb_000347_080 Hb_000347_080 Hb_004447_030--Hb_000347_080 Hb_004447_030--Hb_000265_150 Hb_004447_030--Hb_000529_080 Hb_143629_010 Hb_143629_010 Hb_008887_050--Hb_143629_010 Hb_008887_050--Hb_031939_010 Hb_000923_040 Hb_000923_040 Hb_008887_050--Hb_000923_040 Hb_005503_030 Hb_005503_030 Hb_008887_050--Hb_005503_030 Hb_000290_020 Hb_000290_020 Hb_008887_050--Hb_000290_020 Hb_002007_350 Hb_002007_350 Hb_008887_050--Hb_002007_350 Hb_000976_270--Hb_001663_110 Hb_000209_090 Hb_000209_090 Hb_000976_270--Hb_000209_090 Hb_004525_100 Hb_004525_100 Hb_000976_270--Hb_004525_100 Hb_001956_120 Hb_001956_120 Hb_000976_270--Hb_001956_120 Hb_000676_050 Hb_000676_050 Hb_010968_010--Hb_000676_050 Hb_002292_010 Hb_002292_010 Hb_010968_010--Hb_002292_010 Hb_001504_150 Hb_001504_150 Hb_010968_010--Hb_001504_150 Hb_002784_050 Hb_002784_050 Hb_010968_010--Hb_002784_050 Hb_000920_280 Hb_000920_280 Hb_010968_010--Hb_000920_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.8476 7.97838 11.8658 7.51826 29.1848 24.6822
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.8866 15.1151 9.80074 6.2893 4.52514

CAGE analysis