Hb_000205_160

Information

Type -
Description -
Location Contig205: 230136-242078
Sequence    

Annotation

kegg
ID rcu:RCOM_0609720
description hypothetical protein
nr
ID XP_010102209.1
description Peroxisome biogenesis protein 12 [Morus notabilis]
swissprot
ID Q9M841
description Peroxisome biogenesis protein 12 OS=Arabidopsis thaliana GN=PEX12 PE=1 SV=2
trembl
ID W9RHY4
description Peroxisome biogenesis protein 12 OS=Morus notabilis GN=L484_024490 PE=4 SV=1
Gene Ontology
ID GO:0005779
description peroxisome biogenesis protein 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000205_160 0.0 - - Peroxisome biogenesis protein 12 [Morus notabilis]
2 Hb_003126_080 0.0667734116 - - PREDICTED: uncharacterized protein LOC105647117 [Jatropha curcas]
3 Hb_002284_240 0.0726997432 - - PREDICTED: coiled-coil domain-containing protein 115 isoform X3 [Jatropha curcas]
4 Hb_004223_280 0.073606715 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
5 Hb_000720_120 0.0738078014 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
6 Hb_002081_130 0.0738863588 - - serine carboxypeptidase, putative [Ricinus communis]
7 Hb_000926_250 0.0739042789 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
8 Hb_003615_010 0.0769887891 - - 60S ribosomal protein L8, putative [Ricinus communis]
9 Hb_172632_090 0.0791170975 - - ribosomal pseudouridine synthase, putative [Ricinus communis]
10 Hb_008900_010 0.0798259015 - - PREDICTED: uncharacterized protein LOC105773666 [Gossypium raimondii]
11 Hb_063090_010 0.0799955925 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
12 Hb_000853_170 0.0811050515 - - PREDICTED: programmed cell death protein 2 isoform X3 [Populus euphratica]
13 Hb_005993_040 0.0812119311 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 [Jatropha curcas]
14 Hb_000007_100 0.0813269765 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
15 Hb_000613_140 0.0815896071 - - PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Jatropha curcas]
16 Hb_000300_060 0.0819795538 - - PREDICTED: F-box protein SKIP24 [Jatropha curcas]
17 Hb_003929_250 0.0828533685 - - PREDICTED: proteasome assembly chaperone 4 [Jatropha curcas]
18 Hb_001226_160 0.0833227208 - - PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform X1 [Jatropha curcas]
19 Hb_000327_190 0.0835792947 - - PREDICTED: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2-like [Jatropha curcas]
20 Hb_000510_130 0.0842780913 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000205_160 Hb_000205_160 Hb_003126_080 Hb_003126_080 Hb_000205_160--Hb_003126_080 Hb_002284_240 Hb_002284_240 Hb_000205_160--Hb_002284_240 Hb_004223_280 Hb_004223_280 Hb_000205_160--Hb_004223_280 Hb_000720_120 Hb_000720_120 Hb_000205_160--Hb_000720_120 Hb_002081_130 Hb_002081_130 Hb_000205_160--Hb_002081_130 Hb_000926_250 Hb_000926_250 Hb_000205_160--Hb_000926_250 Hb_000656_400 Hb_000656_400 Hb_003126_080--Hb_000656_400 Hb_005993_040 Hb_005993_040 Hb_003126_080--Hb_005993_040 Hb_172632_090 Hb_172632_090 Hb_003126_080--Hb_172632_090 Hb_004491_010 Hb_004491_010 Hb_003126_080--Hb_004491_010 Hb_003126_080--Hb_004223_280 Hb_003599_040 Hb_003599_040 Hb_002284_240--Hb_003599_040 Hb_159809_020 Hb_159809_020 Hb_002284_240--Hb_159809_020 Hb_002284_240--Hb_000926_250 Hb_000007_100 Hb_000007_100 Hb_002284_240--Hb_000007_100 Hb_000020_060 Hb_000020_060 Hb_002284_240--Hb_000020_060 Hb_000327_190 Hb_000327_190 Hb_002284_240--Hb_000327_190 Hb_002137_020 Hb_002137_020 Hb_004223_280--Hb_002137_020 Hb_005357_030 Hb_005357_030 Hb_004223_280--Hb_005357_030 Hb_002685_170 Hb_002685_170 Hb_004223_280--Hb_002685_170 Hb_000613_140 Hb_000613_140 Hb_004223_280--Hb_000613_140 Hb_001477_130 Hb_001477_130 Hb_004223_280--Hb_001477_130 Hb_000510_130 Hb_000510_130 Hb_004223_280--Hb_000510_130 Hb_000169_010 Hb_000169_010 Hb_000720_120--Hb_000169_010 Hb_001138_050 Hb_001138_050 Hb_000720_120--Hb_001138_050 Hb_003392_040 Hb_003392_040 Hb_000720_120--Hb_003392_040 Hb_000720_120--Hb_000613_140 Hb_000638_080 Hb_000638_080 Hb_000720_120--Hb_000638_080 Hb_000032_570 Hb_000032_570 Hb_000720_120--Hb_000032_570 Hb_002043_190 Hb_002043_190 Hb_002081_130--Hb_002043_190 Hb_066182_010 Hb_066182_010 Hb_002081_130--Hb_066182_010 Hb_000300_060 Hb_000300_060 Hb_002081_130--Hb_000300_060 Hb_003025_020 Hb_003025_020 Hb_002081_130--Hb_003025_020 Hb_002081_130--Hb_005993_040 Hb_002391_300 Hb_002391_300 Hb_002081_130--Hb_002391_300 Hb_000926_250--Hb_000007_100 Hb_033834_040 Hb_033834_040 Hb_000926_250--Hb_033834_040 Hb_001604_080 Hb_001604_080 Hb_000926_250--Hb_001604_080 Hb_002226_070 Hb_002226_070 Hb_000926_250--Hb_002226_070 Hb_063716_050 Hb_063716_050 Hb_000926_250--Hb_063716_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.24053 0.951672 0.733052 0.796077 1.71528 2.15331
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.14391 2.34773 1.22835 1.25909 0.409906

CAGE analysis