Hb_000205_200

Information

Type -
Description -
Location Contig205: 273546-274316
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000205_200 0.0 - - -
2 Hb_000136_160 0.1956827007 - - calmodulin binding protein, putative [Ricinus communis]
3 Hb_117092_010 0.2034363719 - - acyl-CoA oxidase, putative [Ricinus communis]
4 Hb_006376_010 0.2123403375 - - PREDICTED: uncharacterized protein LOC104090718 [Nicotiana tomentosiformis]
5 Hb_004097_040 0.2210287533 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
6 Hb_001979_030 0.2365093 - - hypothetical protein POPTR_0016s06130g [Populus trichocarpa]
7 Hb_092233_010 0.2458174905 - - RecName: Full=Profilin-3; AltName: Full=Pollen allergen Hev b 8.0201; AltName: Allergen=Hev b 8.0201 [Hevea brasiliensis]
8 Hb_044555_010 0.2505097274 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
9 Hb_002259_140 0.2697297311 - - -
10 Hb_000896_110 0.2750726767 - - -
11 Hb_006120_090 0.2986371999 - - PREDICTED: desiccation-related protein PCC13-62-like [Jatropha curcas]
12 Hb_000665_110 0.302531384 - - Ribosomal protein S11-beta [Theobroma cacao]
13 Hb_182005_010 0.3048286935 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
14 Hb_003996_030 0.3068977083 - - -
15 Hb_004200_030 0.3072112176 - - PREDICTED: SWR1 complex subunit 6-like isoform X1 [Citrus sinensis]
16 Hb_026740_010 0.3149581693 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
17 Hb_002094_040 0.3225191206 - - Organic cation transporter protein [Aegilops tauschii]
18 Hb_001563_020 0.3248681105 transcription factor TF Family: TRAF aberrant large forked product, putative [Ricinus communis]
19 Hb_000414_150 0.3250999156 - - mta/sah nucleosidase, putative [Ricinus communis]
20 Hb_004128_040 0.3265319218 - - -

Gene co-expression network

sample Hb_000205_200 Hb_000205_200 Hb_000136_160 Hb_000136_160 Hb_000205_200--Hb_000136_160 Hb_117092_010 Hb_117092_010 Hb_000205_200--Hb_117092_010 Hb_006376_010 Hb_006376_010 Hb_000205_200--Hb_006376_010 Hb_004097_040 Hb_004097_040 Hb_000205_200--Hb_004097_040 Hb_001979_030 Hb_001979_030 Hb_000205_200--Hb_001979_030 Hb_092233_010 Hb_092233_010 Hb_000205_200--Hb_092233_010 Hb_000136_160--Hb_006376_010 Hb_000136_160--Hb_004097_040 Hb_044555_010 Hb_044555_010 Hb_000136_160--Hb_044555_010 Hb_002094_040 Hb_002094_040 Hb_000136_160--Hb_002094_040 Hb_004200_030 Hb_004200_030 Hb_000136_160--Hb_004200_030 Hb_000239_110 Hb_000239_110 Hb_117092_010--Hb_000239_110 Hb_000025_440 Hb_000025_440 Hb_117092_010--Hb_000025_440 Hb_000175_140 Hb_000175_140 Hb_117092_010--Hb_000175_140 Hb_186158_010 Hb_186158_010 Hb_117092_010--Hb_186158_010 Hb_002259_140 Hb_002259_140 Hb_117092_010--Hb_002259_140 Hb_006376_010--Hb_004097_040 Hb_006376_010--Hb_002094_040 Hb_000414_150 Hb_000414_150 Hb_006376_010--Hb_000414_150 Hb_006376_010--Hb_044555_010 Hb_004097_040--Hb_002259_140 Hb_021906_010 Hb_021906_010 Hb_004097_040--Hb_021906_010 Hb_004097_040--Hb_044555_010 Hb_007386_010 Hb_007386_010 Hb_004097_040--Hb_007386_010 Hb_006120_090 Hb_006120_090 Hb_001979_030--Hb_006120_090 Hb_001979_030--Hb_044555_010 Hb_003996_030 Hb_003996_030 Hb_001979_030--Hb_003996_030 Hb_000329_260 Hb_000329_260 Hb_001979_030--Hb_000329_260 Hb_001864_090 Hb_001864_090 Hb_001979_030--Hb_001864_090 Hb_092233_010--Hb_000175_140 Hb_000896_110 Hb_000896_110 Hb_092233_010--Hb_000896_110 Hb_033376_010 Hb_033376_010 Hb_092233_010--Hb_033376_010 Hb_005021_010 Hb_005021_010 Hb_092233_010--Hb_005021_010 Hb_000072_340 Hb_000072_340 Hb_092233_010--Hb_000072_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.366645 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.321032 0.504328 0 0.0530238 0

CAGE analysis